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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
SHJ782
Library SH
(Link to library)
Clone ID SHJ782
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U10784-1|Contig-U12682-1
Original site URL
Representative seq. ID SHJ782P
(Link to Original site)
Representative DNA sequence 
>SHJ782 (SHJ782Q) /CSM/SH/SHJ7-D/SHJ782Q.Seq.d/
ACTGTTGGCCTACTGGNATTTTTTTTTTGAACACATGNAAATGATTCATAAAATGTATTT
TTTTTTAATACTTTTATTTTCATTATTTATTATAGTTNATTCGGCACCAAATCGGGTAAC
CAGAAATGAAACTTCTATAGTATATACCTATTCCCTTGATAGNGATTATTATACTCGTTT
TGTTATGTATCTAAATGCTACTACCTTAANAACTGATATAGCTCCAAATTATTTTGATTG
CAGCCAAATTGTCAACTCANAGAGATATTGNGTATTCCATTTTGCTGATTCATTTTCAAG
ATTATGGGGAGCCGTTTACAGTANAGTCTGTACAANAACAGTATCTGACCCAACGGAGGA
TTGTCAAAGTACTTGGATCACTGATAATGCTTTTCCANAACCCCTCAATGTAAAATTTAG
NGGATATCCAAGTACGTCTGGAGGTGATGTTGTTTTTACTGGCCTTTTTTTAAXXXXXXX
XXXGTTTCAACATTAATTGGAGATGATTTGGGTCCAAATACAACCATTAACATATTTTGA
ACCAAGAATCACAGTTATTCCAACAGTTAAAAATAAAAAAGATGGTATTTCAATAAGAGT
GGGTGGTGTTAGTTTATCAGGTATTATAAATGCAAGTTTAGGAATTTCATCAGAAAATGT
TTCTCTTTCATGTGATTTACAATGTAGTTTATCTCCAAATGAAACATTTTATTTAAGTAA
TCCAATACTAAGTTCAAATGAAAAAGATATAACAAATAGTACTGATTGTTTATCATGTCA
TTCAATGAATTCAATTGTTGTTGATGAAACATCAGGAGTATTATATCTCCAATTAGGCCC
AACATCATATCATTATGATGTTAAAATCGAAGAAATTCAATCATCATTAAATCCATCATC
ATCAAATGGTGGTGAAAGAAAATCATCAAAACTATCAGGTGGTGCAATTGCTGGTATTAC
AATTGGTTGTGTTGCTGGTGCTGGTGCTTTAGTTGGTTCTGTCTTTTATTTTAAATTAAT
CACTCGTGTTAAAAAAGCATTCAATTAATATTTTAATAATAGTATTTGATGGTGTAAATT
ACAAATTGGGATCCAAATTACAGTAGATCATACACAAATTCAAGTGAATAACTTTAATTA
CACGGAAAATATTAATTAATGTATTATAAAAAATATTCATAACATTT
sequence update 2002.10.25
Translated Amino Acid sequence 
LLAYWXFFFEHMXMIHKMYFFLILLFSLFIIVXSAPNRVTRNETSIVYTYSLDXDYYTRF
VMYLNATTLXTDIAPNYFDCSQIVNSXRYXVFHFADSFSRLWGAVYSXVCTXTVSDPTED
CQSTWITDNAFPXPLNVKFXGYPSTSGGDVVFTGLFL---

---VSTLIGDDLGPNTTINIF*tknhsysns*k*krwyfnksgwc*firyykckfrnfir
kcfsfm*ftm*fisk*nilfk*sntkfk*krynk*y*lfimsfnefncc**nirsiispi
rpniisl*c*nrrnsiiiksiiikww*kkiiktirwcncwyynwlccwcwcfswfcllf*
inhsc*ksiqlif***ylmv*itnwdpnysrsytnsse*l*lhgky*lmyykkys*h
Translated Amino Acid sequence (All Frames) 
Frame A:
tvgllxfff*thxnds*nvfffntfifiiyysxfgtksgnqk*nfysiylfp**xllysf
cyvskcyylxn*yssklf*lqpncqlxeilxipfc*fifkimgsrlqxslyxnsi*pngg
lskyldh**cfsxtpqcki*xiskyvwr*ccfywpff---

---VSTLIGDDLGPNTTINIF*tknhsysns*k*krwyfnksgwc*firyykckfrnfir
kcfsfm*ftm*fisk*nilfk*sntkfk*krynk*y*lfimsfnefncc**nirsiispi
rpniisl*c*nrrnsiiiksiiikww*kkiiktirwcncwyynwlccwcwcfswfcllf*
inhsc*ksiqlif***ylmv*itnwdpnysrsytnsse*l*lhgky*lmyykkys*h

Frame B:
LLAYWXFFFEHMXMIHKMYFFLILLFSLFIIVXSAPNRVTRNETSIVYTYSLDXDYYTRF
VMYLNATTLXTDIAPNYFDCSQIVNSXRYXVFHFADSFSRLWGAVYSXVCTXTVSDPTED
CQSTWITDNAFPXPLNVKFXGYPSTSGGDVVFTGLFL---

---fqh*lemiwvqiqpltyfepritviptvknkkdgisirvggvslsgiinaslgisse
nvslscdlqcslspnetfylsnpilssnekditnstdclschsmnsivvdetsgvlylql
gptsyhydvkieeiqsslnpsssnggerkssklsggaiagitigcvagagalvgsvfyfk
litrvkkafn*yfnnsi*wcklqigiqitvdhtqiqvnnfnytenin*ciiknihni

Frame C:
cwptgifflntxk*fikciff*yfyfhyll*xirhqig*pemkll*yipiplixiiilvl
lci*mllp*xli*lqiiliaaklstxrdixysillihfqdygepftvxsvqxqyltqrri
vkvlgslimlfxnpsm*nlxdiqvrlevmlfllaff*---

---fninwr*fgskynh*hilnqesqlfqqlkikkmvfq*ewvvlvyqvl*mqv*efhqk
mflfhviynvvylqmkhfi*viqy*vqmkki*qivlivyhviq*iqlllmkhqeyyisn*
aqhhiimmlkskkfnhh*ihhhqmvvkenhqnyqvvqllvlqlvvllvlvl*lvlsfiln
*slvlkkhsiniliivfdgvnyklgsklq*iihkfk*itlitrkilinvl*kifitf
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SHJ782 (SHJ782Q) /CSM/SH/SHJ7-D/SHJ782Q.Seq.d/                       1324   0.0
CHS184 (CHS184Q) /CSM/CH/CHS1-D/CHS184Q.Seq.d/                       1314   0.0
SHL846 (SHL846Q) /CSM/SH/SHL8-B/SHL846Q.Seq.d/                       1294   0.0
SHL850 (SHL850Q) /CSM/SH/SHL8-C/SHL850Q.Seq.d/                       1289   0.0
SHJ839 (SHJ839Q) /CSM/SH/SHJ8-B/SHJ839Q.Seq.d/                       1287   0.0
SHG880 (SHG880Q) /CSM/SH/SHG8-D/SHG880Q.Seq.d/                       1281   0.0
SHG359 (SHG359Q) /CSM/SH/SHG3-C/SHG359Q.Seq.d/                       1281   0.0
CHF790 (CHF790Q) /CSM/CH/CHF7-D/CHF790Q.Seq.d/                       1281   0.0
SHA715 (SHA715Q) /CSM/SH/SHA7-A/SHA715Q.Seq.d/                       1275   0.0
SHJ515 (SHJ515Q) /CSM/SH/SHJ5-A/SHJ515Q.Seq.d/                       1267   0.0
own update 2004.12.25
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

AB032076|AB032076.1 Dictyostelium discoideum mRNA for lagC2, complete cds.  1116   0.0    5
AC116982|AC116982.2 Dictyostelium discoideum chromosome 2 map 3622643-3879522 strain AX4, complete sequence.    88   3e-36  15
AF482962|AF482962.1 Dictyostelium discoideum ABC transporter AbcH.3 (abcH.3) gene, complete cds.    54   1e-24  6
U09478|U09478.1 Dictyostelium discoideum KAx-3 LagC protein (lagC) mRNA, complete cds.    80   8e-24  4
AF258615|AF258615.1 Dictyostelium discoideum LagC protein (lagC) gene, complete cds.    80   2e-23  4
AC116960|AC116960.2 Dictyostelium discoideum chromosome 2 map complement(1004496-821614) strain AX4, complete sequence.    54   3e-17  10
AC116984|AC116984.2 Dictyostelium discoideum chromosome 2 map 2567470-3108875 strain AX4, complete sequence.    40   0.001  14
AF538053|AF538053.1 Monosiga brevicollis mitochondrion, complete genome.    40   0.002  6
CK265829|CK265829.1 EST711907 potato abiotic stress cDNA library Solanum tuberosum cDNA clone POAC111 5' end, mRNA sequence.    54   0.008  1
AC116957|AC116957.2 Dictyostelium discoideum chromosome 2 map 1685067-2090751 strain AX4, complete sequence.    46   0.026  12
dna update 2006. 5.23
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

FJ374957_1(FJ374957|pid:none) Dictyostelium discoideum strain QS...   339   2e-95
FJ374956_1(FJ374956|pid:none) Dictyostelium discoideum strain QS...   339   2e-95
FJ374958_1(FJ374958|pid:none) Dictyostelium discoideum strain QS...   339   2e-95
FJ374967_1(FJ374967|pid:none) Dictyostelium discoideum strain QS...   339   2e-95
FJ374959_1(FJ374959|pid:none) Dictyostelium discoideum strain QS...   296   1e-82
FJ374964_1(FJ374964|pid:none) Dictyostelium discoideum strain QS...   277   6e-77
FJ374962_1(FJ374962|pid:none) Dictyostelium discoideum strain QS...   265   4e-73
FJ374960_1(FJ374960|pid:none) Dictyostelium discoideum strain QS...   257   6e-71
FJ374955_1(FJ374955|pid:none) Dictyostelium discoideum strain QS...   257   6e-71
FJ374954_1(FJ374954|pid:none) Dictyostelium discoideum strain QS...   257   6e-71
protein update 2009. 5.29
PSORT 

 psg: 0.75  gvh: 0.78  alm: 0.21  top: 0.53  tms: 0.07  mit: 0.27  mip: 0.08
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 1.00  tyr: 0.28  leu: 0.28  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 1.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 0.00 

	 20.0 %: cytoplasmic
	 20.0 %: nuclear
	 16.0 %: Golgi
	 16.0 %: mitochondrial
	 16.0 %: endoplasmic reticulum
	  4.0 %: vacuolar
	  4.0 %: plasma membrane
	  4.0 %: peroxisomal

>> prediction for SHJ782 is cyt
5' end seq. ID SHJ782F
5' end seq. 
>SHJ782F.Seq
ACTGTTGGCCTACTGGNATTTTTTTTTTGAACACATGNAAATGATTCATAAAATGTATTT
TTTTTTAATACTTTTATTTTCATTATTTATTATAGTTNATTCGGCACCAAATCGGGTAAC
CAGAAATGAAACTTCTATAGTATATACCTATTCCCTTGATAGNGATTATTATACTCGTTT
TGTTATGTATCTAAATGCTACTACCTTAANAACTGATATAGCTCCAAATTATTTTGATTG
CAGCCAAATTGTCAACTCANAGAGATATTGNGTATTCCATTTTGCTGATTCATTTTCAAG
ATTATGGGGAGCCGTTTACAGTANAGTCTGTACAANAACAGTATCTGACCCAACGGAGGA
TTGTCAAAGTACTTGGATCACTGATAATGCTTTTCCANAACCCCTCAATGTAAAATTTAG
NGGATATCCAAGTACGTCTGGAGGTGATGTTGTTTTTACTGGCCTTTTTTTAANNNNNNN
NNN
Length of 5' end seq. 483
3' end seq. ID SHJ782Z
3' end seq. 
>SHJ782Z.Seq
NNNNNNNNNNGTTTCAACATTAATTGGAGATGATTTGGGTCCAAATACAACCATTAACAT
ATTTTGAACCAAGAATCACAGTTATTCCAACAGTTAAAAATAAAAAAGATGGTATTTCAA
TAAGAGTGGGTGGTGTTAGTTTATCAGGTATTATAAATGCAAGTTTAGGAATTTCATCAG
AAAATGTTTCTCTTTCATGTGATTTACAATGTAGTTTATCTCCAAATGAAACATTTTATT
TAAGTAATCCAATACTAAGTTCAAATGAAAAAGATATAACAAATAGTACTGATTGTTTAT
CATGTCATTCAATGAATTCAATTGTTGTTGATGAAACATCAGGAGTATTATATCTCCAAT
TAGGCCCAACATCATATCATTATGATGTTAAAATCGAAGAAATTCAATCATCATTAAATC
CATCATCATCAAATGGTGGTGAAAGAAAATCATCAAAACTATCAGGTGGTGCAATTGCTG
GTATTACAATTGGTTGTGTTGCTGGTGCTGGTGCTTTAGTTGGTTCTGTCTTTTATTTTA
AATTAATCACTCGTGTTAAAAAAGCATTCAATTAATATTTTAATAATAGTATTTGATGGT
GTAAATTACAAATTGGGATCCAAATTACAGTAGATCATACACAAATTCAAGTGAATAACT
TTAATTACACGGAAAATATTAATTAATGTATTATAAAAAATATTCATAACATTT
Length of 3' end seq. 714
Connected seq. ID SHJ782P
Connected seq. 
>SHJ782P.Seq
ACTGTTGGCCTACTGGNATTTTTTTTTTGAACACATGNAAATGATTCATAAAATGTATTT
TTTTTTAATACTTTTATTTTCATTATTTATTATAGTTNATTCGGCACCAAATCGGGTAAC
CAGAAATGAAACTTCTATAGTATATACCTATTCCCTTGATAGNGATTATTATACTCGTTT
TGTTATGTATCTAAATGCTACTACCTTAANAACTGATATAGCTCCAAATTATTTTGATTG
CAGCCAAATTGTCAACTCANAGAGATATTGNGTATTCCATTTTGCTGATTCATTTTCAAG
ATTATGGGGAGCCGTTTACAGTANAGTCTGTACAANAACAGTATCTGACCCAACGGAGGA
TTGTCAAAGTACTTGGATCACTGATAATGCTTTTCCANAACCCCTCAATGTAAAATTTAG
NGGATATCCAAGTACGTCTGGAGGTGATGTTGTTTTTACTGGCCTTTTTTTAA-------
---GTTTCAACATTAATTGGAGATGATTTGGGTCCAAATACAACCATTAACATATTTTGA
ACCAAGAATCACAGTTATTCCAACAGTTAAAAATAAAAAAGATGGTATTTCAATAAGAGT
GGGTGGTGTTAGTTTATCAGGTATTATAAATGCAAGTTTAGGAATTTCATCAGAAAATGT
TTCTCTTTCATGTGATTTACAATGTAGTTTATCTCCAAATGAAACATTTTATTTAAGTAA
TCCAATACTAAGTTCAAATGAAAAAGATATAACAAATAGTACTGATTGTTTATCATGTCA
TTCAATGAATTCAATTGTTGTTGATGAAACATCAGGAGTATTATATCTCCAATTAGGCCC
AACATCATATCATTATGATGTTAAAATCGAAGAAATTCAATCATCATTAAATCCATCATC
ATCAAATGGTGGTGAAAGAAAATCATCAAAACTATCAGGTGGTGCAATTGCTGGTATTAC
AATTGGTTGTGTTGCTGGTGCTGGTGCTTTAGTTGGTTCTGTCTTTTATTTTAAATTAAT
CACTCGTGTTAAAAAAGCATTCAATTAATATTTTAATAATAGTATTTGATGGTGTAAATT
ACAAATTGGGATCCAAATTACAGTAGATCATACACAAATTCAAGTGAATAACTTTAATTA
CACGGAAAATATTAATTAATGTATTATAAAAAATATTCATAACATTT
Length of connected seq. 1177
Full length Seq ID -
Full length Seq. -
Length of full length seq. -