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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
AFB190
Library AF
(Link to library)
Clone ID AFB190
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U15664-1
Original site URL
Representative seq. ID AFB190Z
(Link to Original site)
Representative DNA sequence 
>AFB190 (AFB190Q) /CSM/AF/AFB1-D/AFB190Q.Seq.d/
XXXXXXXXXXAGGTATNGGNATTCAAAATTTTAAGAATTCAGTTGCAATTTTTGTACCAC
GTGATAGATATCGTCCAATTGAATCAACAAGTCAATTATTGGTTGCACAATCAAATATTT
TCCAATTTGATCATGGTCAAGTTAAATTAAATTCAAAGAGAGAAGGTCAAGATGAANNAC
TTGTTAAATTGGGTGAAGAATTTTCAACAGTTTCAGATTATGAAAAGAGATTTAAATCAA
TTCCAGATTTATTGGAATTGGATCATCTTACTGTTTCTGGTGATGTTNGCTTTGGTTCAA
GCNATTACTCTTAAAGGTACAGTCATTATTGTAGCTAATCATGGTGAACGTGTTGTATAT
TNCAGCATGGTGTGGNTTTAGAAAATAAAGTA
sequence update 2001. 6. 1
Translated Amino Acid sequence 
---GXGIQNFKNSVAIFVPRDRYRPIESTSQLLVAQSNIFQFDHGQVKLNSKREGQDEXL
VKLGEEFSTVSDYEKRFKSIPDLLELDHLTVSGDVXFGSSXYS*ryshycs*sw*tccix
qhgvxlenkv
Translated Amino Acid sequence (All Frames) 
Frame A:
---GXGIQNFKNSVAIFVPRDRYRPIESTSQLLVAQSNIFQFDHGQVKLNSKREGQDEXL
VKLGEEFSTVSDYEKRFKSIPDLLELDHLTVSGDVXFGSSXYS*ryshycs*sw*tccix
qhgvxlenkv


Frame B:
---vxxfkilriqlqflyhvidivqlnqqvnywlhnqifsnlimvkln*iqrekvkmxxl
lnwvknfqqfqimkrdlnqfqiywnwiillflvmxalvqaitlkgtviivanhgervvyx
smvwx*kik


Frame C:
---yxxskf*efscnfctt**issn*inksiigctikyfpi*swss*ikfkerrsr*xtc
*ig*rifnsfrl*kei*insrfigigssycfw*cxlwfkxlllkvqsll*limvnvlyix
awcgfrk*s
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AFB190 (AFB190Q) /CSM/AF/AFB1-D/AFB190Q.Seq.d/                        710   0.0
VSD295 (VSD295Q) /CSM/VS/VSD2-D/VSD295Q.Seq.d/                        638   0.0
VFL461 (VFL461Q) /CSM/VF/VFL4-C/VFL461Q.Seq.d/                        638   0.0
VFK853 (VFK853Q) /CSM/VF/VFK8-C/VFK853Q.Seq.d/                        638   0.0
SSK668 (SSK668Q) /CSM/SS/SSK6-C/SSK668Q.Seq.d/                        638   0.0
SSI236 (SSI236Q) /CSM/SS/SSI2-B/SSI236Q.Seq.d/                        638   0.0
SSH420 (SSH420Q) /CSM/SS/SSH4-A/SSH420Q.Seq.d/                        638   0.0
SSF238 (SSF238Q) /CSM/SS/SSF2-B/SSF238Q.Seq.d/                        638   0.0
SSE519 (SSE519Q) /CSM/SS/SSE5-A/SSE519Q.Seq.d/                        638   0.0
SSB729 (SSB729Q) /CSM/SS/SSB7-B/SSB729Q.Seq.d/                        638   0.0
own update 2009. 4. 3
Homology vs DNA 

                                                               Score     E
Sequences producing significant alignments:                    (bits)  Value  N

Y00145|Y00145.1 Dictyostelium discoideum UDP glucose pyrophosphorylase gene (UDPGP;  EC 2.7.7.9).   523  e-174  3
AF150929|AF150929.1 Dictyostelium discoideum UDP-glucose pyrophosphorylase 2 (UDPGP2) mRNA, complete cds.    50  3e-10  6
BI322718|BI322718.1 kx15d03.y3 Parastrongyloides trichosuri IL pAMP1 v1 Chiapelli McCarter Parastrongyloides trichosuri cDNA 5' similar to TR:Q9XUS6 Q9XUS6 K08E3.5A PROTEIN. [1] ;, mRNA sequence.    36  0.008  2
BI743473|BI743473.1 kx44f12.y1 Parastrongyloides trichosuri FL pAMP1 v1 Chiapelli McCarter Parastrongyloides trichosuri cDNA 5' similar to TR:Q9XUS6 Q9XUS6 K08E3.5A PROTEIN. [1] ;, mRNA sequence.    36  0.092  2
BF249948|BF249948.1 pa88g07.y1 Hawdon Ancylostoma caninum L3 Ancylostoma caninum cDNA 5' similar to TR:Q9XUS6 Q9XUS6 K08E3.5A PROTEIN. [1] ;, mRNA sequence.    46  0.31  1
BQ666262|BQ666262.1 pb38g03.y1 Anc caninum L3 serum stim pAMP1 v1 Chiapelli McCarter Ancylostoma caninum cDNA 5' similar to TR:Q9XUS6 Q9XUS6 K08E3.5A PROTEIN. [1] ;, mRNA sequence.    46  0.31  1
BI742772|BI742772.1 kx34h07.y1 Parastrongyloides trichosuri IL pAMP1 v1 Chiapelli McCarter Parastrongyloides trichosuri cDNA 5' similar to TR:Q9XUS6 Q9XUS6 K08E3.5A PROTEIN. [1] ;, mRNA sequence.    36  0.40  2
AF004368|AF004368.1 Cricetulus griseus UDP-glucose pyrophosphorylase mRNA, complete cds.    44  1.2  1
AZ765306|AZ765306.1 1M0562M07F Mouse 10kb plasmid UUGC1M library Mus musculus genomic clone UUGC1M0562M07 F, DNA sequence.    40  2.2  2
AF057019|AF057019.1 Dictyostelium discoideum interaptin (abpD) gene, complete cds.    30  2.2  5
dna update 2003. 7.23
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(P08800) RecName: Full=UTP--glucose-1-phosphate uridylyltransfer...   179   8e-49
AK300731_1(AK300731|pid:none) Homo sapiens cDNA FLJ56155 complet...   105   1e-25
S35692(S35692)UTP-glucose-1-phosphate uridylyltransferase (EC 2....   105   1e-25
(Q91ZJ5) RecName: Full=UTP--glucose-1-phosphate uridylyltransfer...   105   1e-25
S62599(S62599)UTP-glucose-1-phosphate uridylyltransferase (EC 2....   105   1e-25
AF534111_1(AF534111|pid:none) Gallus gallus UDP-glucose pyrophos...   105   1e-25
(Q07130) RecName: Full=UTP--glucose-1-phosphate uridylyltransfer...   105   1e-25
AK153885_1(AK153885|pid:none) Mus musculus 2 days neonate thymus...   105   1e-25
BC026626_1(BC026626|pid:none) Mus musculus UDP-glucose pyrophosp...   105   1e-25
BC084711_1(BC084711|pid:none) Rattus norvegicus UDP-glucose pyro...   105   1e-25
protein update 2009. 3.26
PSORT 

 psg: 0.85  gvh: 0.39  alm: 0.52  top: 0.67  tms: 0.00  mit: 0.26  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 44.0 %: cytoplasmic
	 32.0 %: nuclear
	  8.0 %: cytoskeletal
	  8.0 %: mitochondrial
	  4.0 %: peroxisomal
	  4.0 %: endoplasmic reticulum

>> prediction for AFB190 is cyt
5' end seq. ID -
5' end seq. -
Length of 5' end seq. -
3' end seq. ID AFB190Z
3' end seq. 
>AFB190Z.Seq
----------AGGTATNGGNATTCAAAATTTTAAGAATTCAGTTGCAATTTTTGTACCAC
GTGATAGATATCGTCCAATTGAATCAACAAGTCAATTATTGGTTGCACAATCAAATATTT
TCCAATTTGATCATGGTCAAGTTAAATTAAATTCAAAGAGAGAAGGTCAAGATGAANNAC
TTGTTAAATTGGGTGAAGAATTTTCAACAGTTTCAGATTATGAAAAGAGATTTAAATCAA
TTCCAGATTTATTGGAATTGGATCATCTTACTGTTTCTGGTGATGTTNGCTTTGGTTCAA
GCNATTACTCTTAAAGGTACAGTCATTATTGTAGCTAATCATGGTGAACGTGTTGTATAT
TNCAGCATGGTGTGGNTTTAGAAAATAAAGTA
Length of 3' end seq. 382
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -