>SHJ738 (SHJ738Q) /CSM/SH/SHJ7-B/SHJ738Q.Seq.d/
XXXXXXXXXXAATATNTGNGTGATGCTATAATTGAATCAAAAATTAATAGTAAATGGGTC
GATAGTGGTATTAATTATATGGATATTAGTTTGAAAATTACAAATAATGGGCTAAATGAT
ATTA

---YXXDAIIESKINSKWVDSGINYMDISLKITNNGLNDI

Frame A:
---ixx*cyn*ikn***mgr*wy*lygy*fenyk*wak*y


Frame B:
---YXXDAIIESKINSKWVDSGINYMDISLKITNNGLNDI


Frame C:
---xxvml*lnqklivngsivvliiwilv*klqimg*mil

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SHJ738 (SHJ738Q) /CSM/SH/SHJ7-B/SHJ738Q.Seq.d/                        214   2e-55
SSI434 (SSI434Q) /CSM/SS/SSI4-B/SSI434Q.Seq.d/                        208   1e-53
SSB669 (SSB669Q) /CSM/SS/SSB6-C/SSB669Q.Seq.d/                         64   5e-10
CHL208 (CHL208Q) /CSM/CH/CHL2-A/CHL208Q.Seq.d/                         38   0.028
VFG690 (VFG690Q) /CSM/VF/VFG6-D/VFG690Q.Seq.d/                         36   0.11
VSI557 (VSI557Q) /CSM/VS/VSI5-C/VSI557Q.Seq.d/                         34   0.43
VSI383 (VSI383Q) /CSM/VS/VSI3-D/VSI383Q.Seq.d/                         34   0.43
VSI301 (VSI301Q) /CSM/VS/VSI3-A/VSI301Q.Seq.d/                         34   0.43
VSI176 (VSI176Q) /CSM/VS/VSI1-D/VSI176Q.Seq.d/                         34   0.43
VSI167 (VSI167Q) /CSM/VS/VSI1-C/VSI167Q.Seq.d/                         34   0.43

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

AF482963|AF482963.1 Dictyostelium discoideum arsenite transport subunit A (arsA) gene, complete cds.   208   2e-50  1
AC119081|AC119081.4 Rattus norvegicus clone CH230-359O10, *** SEQUENCING IN PROGRESS ***, 2 unordered pieces.    46   0.17   1
AC158926|AC158926.4 Mus musculus chromosome 3, clone RP24-93J4, complete sequence.    44   0.65   1
AC133092|AC133092.4 Mus musculus BAC clone RP23-404G6 from chromosome 3, complete sequence.    44   0.65   1
AC157494|AC157494.2 Mus musculus BAC clone RP23-2F1 from chromosome 12, complete sequence.    40   0.69   2
DN308619|DN308619.1 PL05017A1F05 cDNA from sexually mature hermaphodites Schmidtea mediterranea cDNA 3', mRNA sequence.    34   1.7    2
DN301936|DN301936.1 PL04024A1H02 cDNA from sexually mature hermaphodites Schmidtea mediterranea cDNA 5', mRNA sequence.    34   1.7    2
DR079015|DR079015.1 RTFEPL1_8_A02.g1_A029 Roots plus added iron Pinus taeda cDNA clone RTFEPL1_8_A02_A029 5', mRNA sequence.    42   2.6    1
DR078937|DR078937.1 RTFEPL1_8_A02.b1_A029 Roots plus added iron Pinus taeda cDNA clone RTFEPL1_8_A02_A029 3', mRNA sequence.    42   2.6    1
CT582880|CT582880.1 Pinus pinaster bud EST.                        42   2.6    1

 ***** No hits found ******

Lambda     K      H
   0.313    0.134    0.384

Gapped
Lambda     K      H
   0.267   0.0410    0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3101297
Number of Hits to DB: 128,785,958

 psg: 0.75  gvh: 0.21  alm: 0.60  top: 0.53  tms: 0.00  mit: 0.24  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 48.0 %: nuclear
	 32.0 %: cytoplasmic
	  8.0 %: cytoskeletal
	  8.0 %: mitochondrial
	  4.0 %: vacuolar

>> prediction for SHJ738 is nuc

>SHJ738Z.Seq
NNNNNNNNNNAATATNTGNGTGATGCTATAATTGAATCAAAAATTAATAGTAAATGGGTC
GATAGTGGTATTAATTATATGGATATTAGTTTGAAAATTACAAATAATGGGCTAAATGAT
ATTA