SHJ718
Library SH
(Link to library)
Clone ID SHJ718
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U14647-1
Original site URL
Representative seq. ID
(Link to Original site)
Representative DNA sequence
>SHJ718 (SHJ718Q) /CSM/SH/SHJ7-A/SHJ718Q.Seq.d/
XXXXXXXXXXAAGAACACTTGTATTAAATTGTTAAAAATCTAAAATGTTATTCAAATCAT
TAAATTCAATTGNTAATATCCAAAGTGCATCTCAAAAGAATCAAATTTCAGGAACTCATT
TTTGTTGGAACTTCTCNATNNTAATAATAATNNTGCTCTTT
sequence update 2002. 9.10
Translated Amino Acid sequence
---rtlvlnc*KSKMLFKSLNSIXNIQSASQKNQISGTHFCWNFSXXIIXXLF


Translated Amino Acid sequence (All Frames)
Frame A:
---rtlvlnc*KSKMLFKSLNSIXNIQSASQKNQISGTHFCWNFSXXIIXXLF


Frame B:
---ehly*ivknlkcysnh*iqlxiskvhlkrikfqelifvgtsxx***xcs


Frame C:
---ntcikllki*nviqiikfnx*ypkciskesnfrnsfllellxxnnnxal


Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

SHJ718 (SHJ718Q) /CSM/SH/SHJ7-A/SHJ718Q.Seq.d/ 264 3e-70
SHJ818 (SHJ818Q) /CSM/SH/SHJ8-A/SHJ818Q.Seq.d/ 232 1e-60
SSM557 (SSM557Q) /CSM/SS/SSM5-C/SSM557Q.Seq.d/ 206 7e-53
SSL225 (SSL225Q) /CSM/SS/SSL2-B/SSL225Q.Seq.d/ 206 7e-53
SSJ136 (SSJ136Q) /CSM/SS/SSJ1-B/SSJ136Q.Seq.d/ 127 5e-29
SSC605 (SSC605Q) /CSM/SS/SSC6-A/SSC605Q.Seq.d/ 127 5e-29
SSD502 (SSD502Q) /CSM/SS/SSD5-A/SSD502Q.Seq.d/ 50 1e-05
SSC446 (SSC446Q) /CSM/SS/SSC4-B/SSC446Q.Seq.d/ 50 1e-05
SSA289 (SSA289Q) /CSM/SS/SSA2-D/SSA289Q.Seq.d/ 50 1e-05
SSM732 (SSM732Q) /CSM/SS/SSM7-B/SSM732Q.Seq.d/ 48 4e-05

own update 2002.12. 8
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

AC169024|AC169024.3 Loxodonta africana clone VMRC15-483A12, WORKING DRAFT SEQUENCE, 3 ordered pieces. 46 0.23 1
AC020203|AC020203.1 Drosophila melanogaster, *** SEQUENCING IN PROGRESS ***, in ordered pieces. 44 0.69 3
AL928724|AL928724.10 Zebrafish DNA sequence from clone CH211-51K14 in linkage group 15. 38 0.76 3
EB596805|EB596805.1 AGENCOURT_51492945 D. ananassae EST Drosophila ananassae cDNA clone 161525_D.ANANASSAE_CDNA-041_E10 5', mRNA sequence. 44 0.89 1
EB596625|EB596625.1 AGENCOURT_52189599 D. ananassae EST Drosophila ananassae cDNA clone 161525_D.ANANASSAE_CDNA-041_E10 5', mRNA sequence. 44 0.89 1
EB581474|EB581474.1 AGENCOURT_51926531 D. ananassae EST Drosophila ananassae cDNA clone 161525_D.ANANASSAE_CDNA-041_E10 5', mRNA sequence. 44 0.89 1
DN307545|DN307545.1 PL05014A2B03 cDNA from sexually mature hermaphodites Schmidtea mediterranea cDNA 3', mRNA sequence. 44 0.89 1
DN300133|DN300133.1 PL04018A2E08 cDNA from sexually mature hermaphodites Schmidtea mediterranea cDNA 5', mRNA sequence. 44 0.89 1
BG260865|BG260865.1 602372462F1 NIH_MGC_93 Homo sapiens cDNA clone IMAGE:4480646 5', mRNA sequence. 44 0.89 1
AG930627|AG930627.1 Drosophila melanogaster DNA, clone: DME1-015H09.R.fa, genomic survey sequence. 44 0.89 1
dna update 2006. 5.19
Homology vs Protein

***** No hits found ******

Lambda K H
0.318 0.134 0.401

Gapped
Lambda K H
0.267 0.0410 0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3101297
Number of Hits to DB: 154,461,912
protein update 2009. 5.29
PSORT

psg: 0.76 gvh: 0.47 alm: 0.49 top: 0.53 tms: 0.00 mit: 0.46 mip: 0.00
nuc: 0.00 erl: 0.00 erm: 0.00 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

60.0 %: mitochondrial
24.0 %: nuclear
12.0 %: cytoplasmic
4.0 %: cytoskeletal

>> prediction for SHJ718 is mit

5' end seq. ID -
5' end seq. -
Length of 5' end seq. -
3' end seq. ID SHJ718Z
3' end seq.
>SHJ718Z.Seq
NNNNNNNNNNAAGAACACTTGTATTAAATTGTTAAAAATCTAAAATGTTATTCAAATCAT
TAAATTCAATTGNTAATATCCAAAGTGCATCTCAAAAGAATCAAATTTCAGGAACTCATT
TTTGTTGGAACTTCTCNATNNTAATAATAATNNTGCTCTTT
Length of 3' end seq. 161
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -