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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
SHJ712
Library SH
(Link to library)
Clone ID SHJ712
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16509-1|Contig-U16581-1
Original site URL
Representative seq. ID SHJ712P
(Link to Original site)
Representative DNA sequence 
>SHJ712 (SHJ712Q) /CSM/SH/SHJ7-A/SHJ712Q.Seq.d/
ACTGTTGGCCTACTGGNAAAAATGTCAAATAAATAAAAAAAAAAAAAAAAAATTAAAAAA
AATTTTANTANGTTTTAAAAGGGNNTAGTTTTAATAAAAAAAAAAAAAACCCCCNTTTTT
TTTTTNNTAAAAAAAAAXXXXXXXXXXCNTGGGNCTTANAGAAAATAAAAAAGTTTNAAA
AAAAAATAAAAAATAATAAAAAATAAAAAAAAATAAAAAAAAAAACTTTTAAAACTCTCC
TTCTACTTTTTGGTGCTTCTGTTAAGCTAATGCTAAGGTGTCTCTCTCCCCCTTTGCTTT
GCATTACTCTCCTCAA
sequence update 2002.10.25
Translated Amino Acid sequence 
cwptgknvk*ikkkkkn*KKFXXVLKGXSFNKKKKNPXFFFXKKK---

---WXLXKIKKFXKKIKNNKK*kkikkktfktllllfgasvklmlrclsppllcitll
Translated Amino Acid sequence (All Frames) 
Frame A:
tvgllxkmsnk*kkkkkikknfxxf*kgxvlikkkktpxffxxkk---

---xgxxrk*ksxkkk*kiiknkkk*kkkllklsfyflvllls*c*gvslplcfallss

Frame B:
llaywxkcqinkkkkkklkkilxxfkrx*f**kkkkppfffx*kk---

---xglxenkkvxkknkk**kikknkkknf*nspstfwcfc*anakvslspfalhyspq

Frame C:
cwptgknvk*ikkkkkn*KKFXXVLKGXSFNKKKKNPXFFFXKKK---

---WXLXKIKKFXKKIKNNKK*kkikkktfktllllfgasvklmlrclsppllcitll
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

VSC737 (VSC737Q) /CSM/VS/VSC7-B/VSC737Q.Seq.d/                        180   8e-45
VSA585 (VSA585Q) /CSM/VS/VSA5-D/VSA585Q.Seq.d/                        180   8e-45
SSM803 (SSM803Q) /CSM/SS/SSM8-A/SSM803Q.Seq.d/                        180   8e-45
SSM728 (SSM728Q) /CSM/SS/SSM7-B/SSM728Q.Seq.d/                        180   8e-45
SSM719 (SSM719Q) /CSM/SS/SSM7-A/SSM719Q.Seq.d/                        180   8e-45
SSM276 (SSM276Q) /CSM/SS/SSM2-D/SSM276Q.Seq.d/                        180   8e-45
SSM269 (SSM269Q) /CSM/SS/SSM2-C/SSM269Q.Seq.d/                        180   8e-45
SSM229 (SSM229Q) /CSM/SS/SSM2-B/SSM229Q.Seq.d/                        180   8e-45
SSM165 (SSM165Q) /CSM/SS/SSM1-C/SSM165Q.Seq.d/                        180   8e-45
SSL845 (SSL845Q) /CSM/SS/SSL8-B/SSL845Q.Seq.d/                        180   8e-45
own update 2004. 8.25
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

D16417|D16417.1 Dictyostelium discoideum mRNA.                    180   3e-44  2
CJ470868|CJ470868.1 Macaca fascicularis mRNA, clone: QorA-10455, 5' end, expressed in brain occipital lobe.    52   0.008  1
BZ463651|BZ463651.1 BONRK12TR BO_1.6_2_KB_tot Brassica oleracea genomic clone BONRK12, DNA sequence.    50   0.030  1
CJ482662|CJ482662.1 Macaca fascicularis mRNA, clone: QtsA-10025, 5' end, expressed in testis.    44   1.9    1
CJ436766|CJ436766.1 Macaca fascicularis mRNA, clone: QccE-13890, 5' end, expressed in cerebellum cortex.    44   1.9    1
CJ438634|CJ438634.1 Macaca fascicularis mRNA, clone: QccE-15863, 5' end, expressed in cerebellum cortex.    44   1.9    1
CJ474282|CJ474282.1 Macaca fascicularis mRNA, clone: QorA-14369, 5' end, expressed in brain occipital lobe.    44   1.9    1
CJ430447|CJ430447.1 Macaca fascicularis mRNA, clone: QbsA-10283, 5' end, expressed in brain stem.    44   1.9    1
CJ467100|CJ467100.1 Macaca fascicularis mRNA, clone: QnpA-16542, 5' end, expressed in brain parietal lobe.    44   1.9    1
CJ467447|CJ467447.1 Macaca fascicularis mRNA, clone: QnpA-16963, 5' end, expressed in brain parietal lobe.    44   1.9    1
dna update 2006. 5.19
Homology vs Protein 

 ***** No hits found ******

Lambda     K      H
   0.318    0.134    0.401

Gapped
Lambda     K      H
   0.267   0.0410    0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3101297
Number of Hits to DB: 147,994,857
protein update 2009. 5.29
PSORT 

 psg: 0.49  gvh: 0.22  alm: 0.66  top: 0.53  tms: 0.00  mit: 0.36  mip: 0.00
 nuc: 0.62  erl: 0.00  erm: 0.40  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 84.0 %: nuclear
	 12.0 %: cytoplasmic
	  4.0 %: mitochondrial

>> prediction for SHJ712 is nuc
5' end seq. ID SHJ712F
5' end seq. 
>SHJ712F.Seq
ACTGTTGGCCTACTGGNAAAAATGTCAAATAAATAAAAAAAAAAAAAAAAAATTAAAAAA
AATTTTANTANGTTTTAAAAGGGNNTAGTTTTAATAAAAAAAAAAAAAACCCCCNTTTTT
TTTTTNNTAAAAAAAAANNNNNNNNNN
Length of 5' end seq. 147
3' end seq. ID SHJ712Z
3' end seq. 
>SHJ712Z.Seq
NNNNNNNNNNCNTGGGNCTTANAGAAAATAAAAAAGTTTNAAAAAAAAATAAAAAATAAT
AAAAAATAAAAAAAAATAAAAAAAAAAACTTTTAAAACTCTCCTTCTACTTTTTGGTGCT
TCTGTTAAGCTAATGCTAAGGTGTCTCTCTCCCCCTTTGCTTTGCATTACTCTCCTCAA
Length of 3' end seq. 179
Connected seq. ID SHJ712P
Connected seq. 
>SHJ712P.Seq
ACTGTTGGCCTACTGGNAAAAATGTCAAATAAATAAAAAAAAAAAAAAAAAATTAAAAAA
AATTTTANTANGTTTTAAAAGGGNNTAGTTTTAATAAAAAAAAAAAAAACCCCCNTTTTT
TTTTTNNTAAAAAAAAA----------CNTGGGNCTTANAGAAAATAAAAAAGTTTNAAA
AAAAAATAAAAAATAATAAAAAATAAAAAAAAATAAAAAAAAAAACTTTTAAAACTCTCC
TTCTACTTTTTGGTGCTTCTGTTAAGCTAATGCTAAGGTGTCTCTCTCCCCCTTTGCTTT
GCATTACTCTCCTCAA
Length of connected seq. 306
Full length Seq ID -
Full length Seq. -
Length of full length seq. -