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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
SHJ677
Library SH
(Link to library)
Clone ID SHJ677
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U15685-1
Original site URL
Representative seq. ID SHJ677P
(Link to Original site)
Representative DNA sequence 
>SHJ677 (SHJ677Q) /CSM/SH/SHJ6-D/SHJ677Q.Seq.d/
ACTGTTGGCCTACTGGNATTTTTTTTCAAAAAACTATTTAAAAAAAAATAGAGAATATAG
TTATATATATAACACACAAAAAAATTCATATCACATTATTGTTTTTCATTAATTTATAAA
CAATAATATATATATAATAAACACTCTATCATTTAATTTTAATAAAAAAAAAAXXXXXXX
XXXATCCACCATTCATTCTTCCAACCATTATCGCTATGTTCTTGTCACCAGGTGGTACAC
CAGATGTTGTCTTCTTCTCTGGTCAAGGTGCTGTTCAAACCGCTCTCTTATTCTTGGCTC
TCATTTCCATTCCAGTTATGTTGGTCATTAAACCATTGTTCATGAAGAGATTCCACTTCC
AAGAAGTCGAAAGAAAGAAATTAGGTCACCACGAAGAGGAACATGATGATGAAGCTCTCT
ACACTGGTCATCACGGTGAAGAATTTGAAATGGGTGAAGTCTTTGTTCATCAAGTCATTC
ATACCATCGAGTTTGTTTTGGGTGCTGTTTCAAATACTGCCTCTTATCTTCGTTTATGGG
CTCTTTCATTGGCTCACTCTGAGTTATCTTCTGTATTTTGGGAACGTATTCTCATTGGTC
AAGTCGAACGTGGTAATCCATTCTTGGCTTTCGTTGGTTTTGGTGCTTGGTTAGGTGCCT
CTGTTGCTGTACTTTTACTTATGGAATCCCTTTCTGCTTTCTTGCACGCTCTTAGANTTC
ATTGGGTAGAATTCCAAAATNAATTNTATATTGGTGATGGTGTTAGATTCATTCCATACA
GTNCCACTCGTATTC
sequence update 2002.10.25
Translated Amino Acid sequence 
llaywxffsknylkknreysyiyntqknsyhiivfh*FINNNIYIINTLSFNFNKKK---

---PPFILPTIIAMFLSPGGTPDVVFFSGQGAVQTALLFLALISIPVMLVIKPLFMKRFH
FQEVERKKLGHHEEEHDDEALYTGHHGEEFEMGEVFVHQVIHTIEFVLGAVSNTASYLRL
WALSLAHSELSSVFWERILIGQVERGNPFLAFVGFGAWLGASVAVLLLMESLSAFLHALR
XHWVEFQNXXYIGDGVRFIPYSXTRI
Translated Amino Acid sequence (All Frames) 
Frame A:
tvgllxfffkklfkkk*ri*lyi*htkkfishycfsliykq*yiynkhsii*f**kk---

---ihhsffqplslcschqvvhqmlssslvkvlfkplsyswlsfpfqlcwslnhcs*rds
tskkskern*vttkrnmmmklstlvitvknlkwvkslfiksfipsslfwvlfqilplifv
yglfhwltlsyllyfgnvfslvksnvvihswlslvlvlg*vplllyfylwnpfllsctll
xfig*nskxnxilvmvldsfhtvplvf

Frame B:
llaywxffsknylkknreysyiyntqknsyhiivfh*FINNNIYIINTLSFNFNKKK---

---stihssnhyryvlvtrwytrcclllwsrccsnrslilgshfhssyvgh*tivheeip
lprsrkkeirsprrgt***sslhwssr*ri*ng*slcssshsyhrvcfgccfkycllssf
mgsfigsl*vifcilgtyshwssrtw*silgfrwfwclvrclccctftygipfcflars*
xslgripkxixyw*wc*ihsiqxhsy

Frame C:
cwptgiffqkti*kkieniviyithkkihitllffinl*tiiyi**tlyhlilikkk---

---PPFILPTIIAMFLSPGGTPDVVFFSGQGAVQTALLFLALISIPVMLVIKPLFMKRFH
FQEVERKKLGHHEEEHDDEALYTGHHGEEFEMGEVFVHQVIHTIEFVLGAVSNTASYLRL
WALSLAHSELSSVFWERILIGQVERGNPFLAFVGFGAWLGASVAVLLLMESLSAFLHALR
XHWVEFQNXXYIGDGVRFIPYSXTRI
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

VHN293 (VHN293Q) /CSM/VH/VHN2-D/VHN293Q.Seq.d/                       1189   0.0
SHJ677 (SHJ677Q) /CSM/SH/SHJ6-D/SHJ677Q.Seq.d/                       1189   0.0
CHR818 (CHR818Q) /CSM/CH/CHR8-A/CHR818Q.Seq.d/                       1189   0.0
CHR349 (CHR349Q) /CSM/CH/CHR3-C/CHR349Q.Seq.d/                       1189   0.0
CHL154 (CHL154Q) /CSM/CH/CHL1-C/CHL154Q.Seq.d/                       1189   0.0
CHH295 (CHH295Q) /CSM/CH/CHH2-D/CHH295Q.Seq.d/                       1189   0.0
CHF322 (CHF322Q) /CSM/CH/CHF3-A/CHF322Q.Seq.d/                       1189   0.0
SHE806 (SHE806Q) /CSM/SH/SHE8-A/SHE806Q.Seq.d/                       1187   0.0
SHJ838 (SHJ838Q) /CSM/SH/SHJ8-B/SHJ838Q.Seq.d/                       1183   0.0
SHG617 (SHG617Q) /CSM/SH/SHG6-A/SHG617Q.Seq.d/                       1183   0.0
own update 2004.12.25
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

U38803|U38803.1 Dictyostelium discoideum vacuolar proton ATPase 100-kDa subunit (vatM) mRNA, complete cds.  1189   0.0    1
BF272276|BF272276.2 GA__Eb0014G21f Gossypium arboreum 7-10 dpa fiber library Gossypium arboreum cDNA clone GA__Eb0014G21f, mRNA sequence.    72   3e-11  2
DY983049|DY983049.1 CLSS5348.b1_H18.ab1 CLS(LMS) lettuce sativa Lactuca sativa cDNA clone CLSS5348, mRNA sequence.    80   9e-11  1
BQ853466|BQ853466.1 QGB20J11.yg.ab1 QG_ABCDI lettuce salinas Lactuca sativa cDNA clone QGB20J11, mRNA sequence.    80   9e-11  1
BU012351|BU012351.1 QGJ1L02.yg.ab1 QG_EFGHJ lettuce serriola Lactuca sativa cDNA clone QGJ1L02, mRNA sequence.    80   9e-11  1
DT466948|DT466948.1 GH_CHX19K13.f GH_CHX Gossypium hirsutum cDNA clone GH_CHX19K13 5', mRNA sequence.    72   2e-08  1
DT457612|DT457612.1 GH_ON34M24.r GH_ON Gossypium hirsutum cDNA clone GH_ON34M24 3', mRNA sequence.    72   2e-08  1
DT457611|DT457611.1 GH_ON34M24.f GH_ON Gossypium hirsutum cDNA clone GH_ON34M24 5', mRNA sequence.    72   2e-08  1
CO114094|CO114094.1 GR__Eb015A17.r GR__Eb Gossypium raimondii cDNA clone GR__Eb015A17 3', mRNA sequence.    72   2e-08  1
CO127208|CO127208.1 GR__Eb11K12.r GR__Eb Gossypium raimondii cDNA clone GR__Eb11K12 3', mRNA sequence.    72   2e-08  1
dna update 2006. 5.19
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(Q54E04) RecName: Full=Vacuolar proton translocating ATPase 100 ...   401   e-110
U38803_1(U38803|pid:none) Dictyostelium discoideum vacuolar prot...   401   e-110
AC093568_14(AC093568|pid:none) Oryza sativa chromosome 10 clone ...   200   4e-50
AK101151_1(AK101151|pid:none) Oryza sativa Japonica Group cDNA c...   196   7e-49
CP000588_396(CP000588|pid:none) Ostreococcus lucimarinus CCE9901...   194   3e-48
AL035679_18(AL035679|pid:none) Arabidopsis thaliana DNA chromoso...   193   4e-48
AK227321_1(AK227321|pid:none) Arabidopsis thaliana mRNA for hypo...   193   4e-48
AK230210_1(AK230210|pid:none) Arabidopsis thaliana mRNA for hypo...   192   8e-48
CR954208_391(CR954208|pid:none) Ostreococcus tauri strain OTTH05...   192   1e-47
AK221976_1(AK221976|pid:none) Arabidopsis thaliana mRNA for hypo...   190   4e-47
protein update 2009. 5.29
PSORT 

 psg: 0.85  gvh: 0.56  alm: 0.18  top: 0.77  tms: 0.20  mit: 0.30  mip: 0.13
 nuc: 0.03  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 1.00  m_ : 0.00 

	 24.0 %: endoplasmic reticulum
	 24.0 %: plasma membrane
	 16.0 %: vacuolar
	 12.0 %: nuclear
	 12.0 %: mitochondrial
	  4.0 %: cytoskeletal
	  4.0 %: Golgi
	  4.0 %: cytoplasmic

>> prediction for SHJ677 is end
5' end seq. ID SHJ677F
5' end seq. 
>SHJ677F.Seq
ACTGTTGGCCTACTGGNATTTTTTTTCAAAAAACTATTTAAAAAAAAATAGAGAATATAG
TTATATATATAACACACAAAAAAATTCATATCACATTATTGTTTTTCATTAATTTATAAA
CAATAATATATATATAATAAACACTCTATCATTTAATTTTAATAAAAAAAAAANNNNNNN
NNN
Length of 5' end seq. 183
3' end seq. ID SHJ677Z
3' end seq. 
>SHJ677Z.Seq
NNNNNNNNNNATCCACCATTCATTCTTCCAACCATTATCGCTATGTTCTTGTCACCAGGT
GGTACACCAGATGTTGTCTTCTTCTCTGGTCAAGGTGCTGTTCAAACCGCTCTCTTATTC
TTGGCTCTCATTTCCATTCCAGTTATGTTGGTCATTAAACCATTGTTCATGAAGAGATTC
CACTTCCAAGAAGTCGAAAGAAAGAAATTAGGTCACCACGAAGAGGAACATGATGATGAA
GCTCTCTACACTGGTCATCACGGTGAAGAATTTGAAATGGGTGAAGTCTTTGTTCATCAA
GTCATTCATACCATCGAGTTTGTTTTGGGTGCTGTTTCAAATACTGCCTCTTATCTTCGT
TTATGGGCTCTTTCATTGGCTCACTCTGAGTTATCTTCTGTATTTTGGGAACGTATTCTC
ATTGGTCAAGTCGAACGTGGTAATCCATTCTTGGCTTTCGTTGGTTTTGGTGCTTGGTTA
GGTGCCTCTGTTGCTGTACTTTTACTTATGGAATCCCTTTCTGCTTTCTTGCACGCTCTT
AGANTTCATTGGGTAGAATTCCAAAATNAATTNTATATTGGTGATGGTGTTAGATTCATT
CCATACAGTNCCACTCGTATTC
Length of 3' end seq. 622
Connected seq. ID SHJ677P
Connected seq. 
>SHJ677P.Seq
ACTGTTGGCCTACTGGNATTTTTTTTCAAAAAACTATTTAAAAAAAAATAGAGAATATAG
TTATATATATAACACACAAAAAAATTCATATCACATTATTGTTTTTCATTAATTTATAAA
CAATAATATATATATAATAAACACTCTATCATTTAATTTTAATAAAAAAAAAA-------
---ATCCACCATTCATTCTTCCAACCATTATCGCTATGTTCTTGTCACCAGGTGGTACAC
CAGATGTTGTCTTCTTCTCTGGTCAAGGTGCTGTTCAAACCGCTCTCTTATTCTTGGCTC
TCATTTCCATTCCAGTTATGTTGGTCATTAAACCATTGTTCATGAAGAGATTCCACTTCC
AAGAAGTCGAAAGAAAGAAATTAGGTCACCACGAAGAGGAACATGATGATGAAGCTCTCT
ACACTGGTCATCACGGTGAAGAATTTGAAATGGGTGAAGTCTTTGTTCATCAAGTCATTC
ATACCATCGAGTTTGTTTTGGGTGCTGTTTCAAATACTGCCTCTTATCTTCGTTTATGGG
CTCTTTCATTGGCTCACTCTGAGTTATCTTCTGTATTTTGGGAACGTATTCTCATTGGTC
AAGTCGAACGTGGTAATCCATTCTTGGCTTTCGTTGGTTTTGGTGCTTGGTTAGGTGCCT
CTGTTGCTGTACTTTTACTTATGGAATCCCTTTCTGCTTTCTTGCACGCTCTTAGANTTC
ATTGGGTAGAATTCCAAAATNAATTNTATATTGGTGATGGTGTTAGATTCATTCCATACA
GTNCCACTCGTATTC
Length of connected seq. 785
Full length Seq ID -
Full length Seq. -
Length of full length seq. -