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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
SHJ666
Library SH
(Link to library)
Clone ID SHJ666
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig -
Original site URL
Representative seq. ID SHJ666P
(Link to Original site)
Representative DNA sequence 
>SHJ666 (SHJ666Q) /CSM/SH/SHJ6-C/SHJ666Q.Seq.d/
CTGTTGGCCTACTGGNATTGACCCGCAATTAGTAATTAGTAAAGNAATGAAATTAAAACA
TTTAACTATTTTTTTATTTATTTTTATTTATAGGTTTTTATTTGTTAAATCGGATTGTTA
TCTAATAAACAATGAAAGGCCGGAGNCAAAAATAACCAAAATCCGATGTGATGATCAAGT
TATTTCCATTCTTTTAAATCCAAATAATAGAACTGATGCAACACTGGAAAAGGACACTGA
TGGAAAGTTTTATTTTGATGTTGTTAATTTTCCATACAAGGATAGACTTTGTGATTATAC
CTATGATATTTATTTTTTACCAGAAATCCCATCCCTTCCATCTGTCCCCACAATAGGAGG
ATCCGTTAATTTCACATATAACTATCCTTGTACAAGTGTTTATGGTAGAATAAAACCTTT
GAATATAGCAAACAAAATTGTAACACCATACAATATCAATTTAGACCAGTTCACCATGAG
AATACAACCAGGCTGTGGAGATTTAATTATAAATTCAGGCTCAAGAGTAATTTATAATGC
TTCATATCAAACTGGAGATATACCAAATAAACCAACAATCGATGACCAAGGAAATATTAC
CATTCAAGGAAGTAACCTTTACAACACCCAAATTAAAATTAATTCXXXXXXXXXXATCAA
CATTCACACTTATTCTAGTTTAACCTGTAATGTAACCAACTATGATGAAATGCTAAAATA
TAACTACTCCCAATACTAAATTCAATATCAGTATCTCTGTTGATGGTCAATACTTTATTG
CTCAAATTTTCCAATTTAAATATGAATCAACAATTAGTTATAGTGAAAATAAGTCATCAG
GATTTCCAAATGAAATGTATATCGGTATTGTTGCAATTATAATATTTTTAGCATTAATTT
TCTTTGCTATTAAAACACAGGTTGAAAAATATATTGAAGAGAGAAGAGCCAGAAAAGCAT
TTAGATCAGTTGATAATCTACGTCTTAAACTTCGTGAGAAACATGCTGCTGAAATCGCTA
AACATTATTCATTTGGTTATGAAAGCGCTCCAAAACCAAATAAAAGTTATTTCTATGATT
TAGGAAAGAAATTATCTAGACTCCCACTCATTAGATGTTGTCTCAAAGAACATACTGATT
AAATACTATTTCCAAATTCAAATCCAATAATATCCAATTCTAAATTAAACCTAAACCAAA
TTCACCAATCTATAATCAAATAATCAATTTATATCTTGTAATTGTTTTTGTTCTTGTATC
ATCTCATCTTCAATATCTATCTACAATTTTTTTCTTTTACTTCTAATATATTTAAAACAA
ATAAATAAATAAATAAAAAAAAAGCAAATAATTACTCAATTATTTTTTAAATTTTA
sequence update 2002.10.25
Translated Amino Acid sequence 
CWPTGIDPQLVISKXMKLKHLTIFLFIFIYRFLFVKSDCYLINNERPEXKITKIRCDDQV
ISILLNPNNRTDATLEKDTDGKFYFDVVNFPYKDRLCDYTYDIYFLPEIPSLPSVPTIGG
SVNFTYNYPCTSVYGRIKPLNIANKIVTPYNINLDQFTMRIQPGCGDLIINSGSRVIYNA
SYQTGDIPNKPTIDDQGNITIQGSNLYNTQIKIN---

---INIHTYSSLTCNVTNYDEMLKYNYSQY*iqyqylc*wsilycsnfpi*i*inn*l**
k*virisk*nvyryccnynifsinflcy*ntg*kiy*reksqksi*is**sts*ts*etc
c*nr*tlfiwl*krsktk*klfl*frkeii*tpth*mlsqrty*lntiskfksnniqf*i
kpkpnspiynqiinlylvivfvlvsshlqylstifffyf*yi*nk*ink*kksk*llnyf
lnf
Translated Amino Acid sequence (All Frames) 
Frame A:
llaywx*paisn**xneiktfnyffiyfyl*vfic*igllsnkq*kagxknnqnpm**ss
yfhsfksk**n*cntgkgh*wkvlf*cc*fsiqg*tl*lyl*ylfftrnpipsicphnrr
ir*fhi*lslykclw*nktfeyskqncntiqyqfrpvhhenttrlwrfnykfrlksnl*c
fisnwrytk*tnnr*prkyyhsrk*plqhpn*n*f---

---INIHTYSSLTCNVTNYDEMLKYNYSQY*iqyqylc*wsilycsnfpi*i*inn*l**
k*virisk*nvyryccnynifsinflcy*ntg*kiy*reksqksi*is**sts*ts*etc
c*nr*tlfiwl*krsktk*klfl*frkeii*tpth*mlsqrty*lntiskfksnniqf*i
kpkpnspiynqiinlylvivfvlvsshlqylstifffyf*yi*nk*ink*kksk*llnyf
lnf

Frame B:
CWPTGIDPQLVISKXMKLKHLTIFLFIFIYRFLFVKSDCYLINNERPEXKITKIRCDDQV
ISILLNPNNRTDATLEKDTDGKFYFDVVNFPYKDRLCDYTYDIYFLPEIPSLPSVPTIGG
SVNFTYNYPCTSVYGRIKPLNIANKIVTPYNINLDQFTMRIQPGCGDLIINSGSRVIYNA
SYQTGDIPNKPTIDDQGNITIQGSNLYNTQIKIN---

---stftlilv*pvm*ptmmkc*nittpntkfnisisvdgqyfiaqifqfkyestisyse
nkssgfpnemyigivaiiiflaliffaiktqvekyieerrarkafrsvdnlrlklrekha
aeiakhysfgyesapkpnksyfydlgkklsrlplircclkehtd*ilfpnsnpiisnskl
nlnqihqsiik*siyil*lflflyhlifniylqffsftsnifktnk*inkkkannysiif
*il

Frame C:
vgllxltrn**lvkx*n*ni*lffylflfigfyllnrivi**tmkgrxqk*pksdvmikl
fpff*iqiielmqhwkrtlmesfilmllifhtridfviipmififyqkshpfhlspq*ed
plishitilvqvfmve*nl*i*qtkl*hhtisi*tssp*eynqavei*l*iqaqe*fiml
hikleiyqinqqsmtkeilpfkevtfttpklkli---

---qhshlf*fnl*cnql**naki*llpilnsisvsllmvntlllkfsnlnmnqqlvivk
ishqdfqmkcisvllql*yf*h*fslllkhrlknilkreepekhldqliiyvlnfvrnml
lkslniihlvmkalqnqikvismi*ernyldshsldvvsknilikyyfqiqiq*ypiln*
t*tkftnl*snnqfiscncfcsciisssisiynfflllliylkqink*ikkkqiitqlff
kf
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SHJ666 (SHJ666Q) /CSM/SH/SHJ6-C/SHJ666Q.Seq.d/                       2290   0.0
SHL812 (SHL812Q) /CSM/SH/SHL8-A/SHL812Q.Seq.d/                       1237   0.0
SHL593 (SHL593Q) /CSM/SH/SHL5-D/SHL593Q.Seq.d/                       1237   0.0
SHL342 (SHL342Q) /CSM/SH/SHL3-B/SHL342Q.Seq.d/                       1237   0.0
SHK837 (SHK837Q) /CSM/SH/SHK8-B/SHK837Q.Seq.d/                       1237   0.0
SHK774 (SHK774Q) /CSM/SH/SHK7-D/SHK774Q.Seq.d/                       1237   0.0
SHK745 (SHK745Q) /CSM/SH/SHK7-B/SHK745Q.Seq.d/                       1237   0.0
SHK629 (SHK629Q) /CSM/SH/SHK6-B/SHK629Q.Seq.d/                       1237   0.0
SHK166 (SHK166Q) /CSM/SH/SHK1-C/SHK166Q.Seq.d/                       1237   0.0
SHJ615 (SHJ615Q) /CSM/SH/SHJ6-A/SHJ615Q.Seq.d/                       1237   0.0
own update 2004.12.25
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

AC116982|AC116982.2 Dictyostelium discoideum chromosome 2 map 3622643-3879522 strainAX4, complete sequence.   129   6e-81  15
AL139075|AL139075.2 Campylobacter jejuni NCTC11168 complete genome; segment 2/6.    36   0.005  14
AX344559|AX344559.1 Sequence 10 from Patent WO0200932.             34   0.014  15
DD010735|DD010735.1 Diagnosis of known genetic Parameters within the MHC.    36   0.019  15
AX345887|AX345887.1 Sequence 958 from Patent WO0200928.            34   0.051  6
AZ687404|AZ687404.1 ENTIV16TF Entamoeba histolytica Sheared DNA Entamoeba histolytica genomic, DNA sequence.    40   0.10   2
AZ532160|AZ532160.1 ENTCE42TF Entamoeba histolytica Sheared DNA Entamoeba histolytica genomic, DNA sequence.    40   0.11   2
BH150005|BH150005.1 ENTQN09TF Entamoeba histolytica Sheared DNA Entamoeba histolytica genomic, DNA sequence.    40   0.11   2
AZ551491|AZ551491.1 ENTFT25TR Entamoeba histolytica Sheared DNA Entamoeba histolytica genomic, DNA sequence.    40   0.11   2
AZ672938|AZ672938.1 ENTMM06TF Entamoeba histolytica Sheared DNA Entamoeba histolytica genomic, DNA sequence.    40   0.11   2
dna update 2006. 5.19
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

FJ374971_1(FJ374971|pid:none) Dictyostelium discoideum strain AX...   381   e-104
FJ374968_1(FJ374968|pid:none) Dictyostelium discoideum strain QS...   380   e-104
FJ374973_1(FJ374973|pid:none) Dictyostelium discoideum strain QS...   380   e-104
FJ374970_1(FJ374970|pid:none) Dictyostelium discoideum strain QS...   380   e-104
FJ374902_1(FJ374902|pid:none) Dictyostelium discoideum strain QS...   205   2e-63
FJ374903_1(FJ374903|pid:none) Dictyostelium discoideum strain QS...   204   2e-63
FJ374895_1(FJ374895|pid:none) Dictyostelium discoideum strain QS...   204   2e-63
FJ374919_1(FJ374919|pid:none) Dictyostelium discoideum strain QS...   204   3e-63
FJ374905_1(FJ374905|pid:none) Dictyostelium discoideum strain QS...   204   3e-63
FJ374918_1(FJ374918|pid:none) Dictyostelium discoideum strain QS...   202   9e-63
protein update 2009. 4.26
PSORT 

 psg: 0.75  gvh: 0.44  alm: 0.31  top: 0.37  tms: 0.07  mit: 0.26  mip: 0.06
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 1.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 1.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 0.00 

	 24.0 %: endoplasmic reticulum
	 20.0 %: mitochondrial
	 20.0 %: cytoplasmic
	 16.0 %: nuclear
	  8.0 %: Golgi
	  8.0 %: plasma membrane
	  4.0 %: vesicles of secretory system

>> prediction for SHJ666 is end
5' end seq. ID SHJ666F
5' end seq. 
>SHJ666F.Seq
CTGTTGGCCTACTGGNATTGACCCGCAATTAGTAATTAGTAAAGNAATGAAATTAAAACA
TTTAACTATTTTTTTATTTATTTTTATTTATAGGTTTTTATTTGTTAAATCGGATTGTTA
TCTAATAAACAATGAAAGGCCGGAGNCAAAAATAACCAAAATCCGATGTGATGATCAAGT
TATTTCCATTCTTTTAAATCCAAATAATAGAACTGATGCAACACTGGAAAAGGACACTGA
TGGAAAGTTTTATTTTGATGTTGTTAATTTTCCATACAAGGATAGACTTTGTGATTATAC
CTATGATATTTATTTTTTACCAGAAATCCCATCCCTTCCATCTGTCCCCACAATAGGAGG
ATCCGTTAATTTCACATATAACTATCCTTGTACAAGTGTTTATGGTAGAATAAAACCTTT
GAATATAGCAAACAAAATTGTAACACCATACAATATCAATTTAGACCAGTTCACCATGAG
AATACAACCAGGCTGTGGAGATTTAATTATAAATTCAGGCTCAAGAGTAATTTATAATGC
TTCATATCAAACTGGAGATATACCAAATAAACCAACAATCGATGACCAAGGAAATATTAC
CATTCAAGGAAGTAACCTTTACAACACCCAAATTAAAATTAATTCNNNNNNNNNN
Length of 5' end seq. 655
3' end seq. ID SHJ666Z
3' end seq. 
>SHJ666Z.Seq
NNNNNNNNNNATCAACATTCACACTTATTCTAGTTTAACCTGTAATGTAACCAACTATGA
TGAAATGCTAAAATATAACTACTCCCAATACTAAATTCAATATCAGTATCTCTGTTGATG
GTCAATACTTTATTGCTCAAATTTTCCAATTTAAATATGAATCAACAATTAGTTATAGTG
AAAATAAGTCATCAGGATTTCCAAATGAAATGTATATCGGTATTGTTGCAATTATAATAT
TTTTAGCATTAATTTTCTTTGCTATTAAAACACAGGTTGAAAAATATATTGAAGAGAGAA
GAGCCAGAAAAGCATTTAGATCAGTTGATAATCTACGTCTTAAACTTCGTGAGAAACATG
CTGCTGAAATCGCTAAACATTATTCATTTGGTTATGAAAGCGCTCCAAAACCAAATAAAA
GTTATTTCTATGATTTAGGAAAGAAATTATCTAGACTCCCACTCATTAGATGTTGTCTCA
AAGAACATACTGATTAAATACTATTTCCAAATTCAAATCCAATAATATCCAATTCTAAAT
TAAACCTAAACCAAATTCACCAATCTATAATCAAATAATCAATTTATATCTTGTAATTGT
TTTTGTTCTTGTATCATCTCATCTTCAATATCTATCTACAATTTTTTTCTTTTACTTCTA
ATATATTTAAAACAAATAAATAAATAAATAAAAAAAAAGCAAATAATTACTCAATTATTT
TTTAAATTTTA
Length of 3' end seq. 731
Connected seq. ID SHJ666P
Connected seq. 
>SHJ666P.Seq
CTGTTGGCCTACTGGNATTGACCCGCAATTAGTAATTAGTAAAGNAATGAAATTAAAACA
TTTAACTATTTTTTTATTTATTTTTATTTATAGGTTTTTATTTGTTAAATCGGATTGTTA
TCTAATAAACAATGAAAGGCCGGAGNCAAAAATAACCAAAATCCGATGTGATGATCAAGT
TATTTCCATTCTTTTAAATCCAAATAATAGAACTGATGCAACACTGGAAAAGGACACTGA
TGGAAAGTTTTATTTTGATGTTGTTAATTTTCCATACAAGGATAGACTTTGTGATTATAC
CTATGATATTTATTTTTTACCAGAAATCCCATCCCTTCCATCTGTCCCCACAATAGGAGG
ATCCGTTAATTTCACATATAACTATCCTTGTACAAGTGTTTATGGTAGAATAAAACCTTT
GAATATAGCAAACAAAATTGTAACACCATACAATATCAATTTAGACCAGTTCACCATGAG
AATACAACCAGGCTGTGGAGATTTAATTATAAATTCAGGCTCAAGAGTAATTTATAATGC
TTCATATCAAACTGGAGATATACCAAATAAACCAACAATCGATGACCAAGGAAATATTAC
CATTCAAGGAAGTAACCTTTACAACACCCAAATTAAAATTAATTC----------ATCAA
CATTCACACTTATTCTAGTTTAACCTGTAATGTAACCAACTATGATGAAATGCTAAAATA
TAACTACTCCCAATACTAAATTCAATATCAGTATCTCTGTTGATGGTCAATACTTTATTG
CTCAAATTTTCCAATTTAAATATGAATCAACAATTAGTTATAGTGAAAATAAGTCATCAG
GATTTCCAAATGAAATGTATATCGGTATTGTTGCAATTATAATATTTTTAGCATTAATTT
TCTTTGCTATTAAAACACAGGTTGAAAAATATATTGAAGAGAGAAGAGCCAGAAAAGCAT
TTAGATCAGTTGATAATCTACGTCTTAAACTTCGTGAGAAACATGCTGCTGAAATCGCTA
AACATTATTCATTTGGTTATGAAAGCGCTCCAAAACCAAATAAAAGTTATTTCTATGATT
TAGGAAAGAAATTATCTAGACTCCCACTCATTAGATGTTGTCTCAAAGAACATACTGATT
AAATACTATTTCCAAATTCAAATCCAATAATATCCAATTCTAAATTAAACCTAAACCAAA
TTCACCAATCTATAATCAAATAATCAATTTATATCTTGTAATTGTTTTTGTTCTTGTATC
ATCTCATCTTCAATATCTATCTACAATTTTTTTCTTTTACTTCTAATATATTTAAAACAA
ATAAATAAATAAATAAAAAAAAAGCAAATAATTACTCAATTATTTTTTAAATTTTA
Length of connected seq. 1366
Full length Seq ID -
Full length Seq. -
Length of full length seq. -