>SHJ605 (SHJ605Q) /CSM/SH/SHJ6-A/SHJ605Q.Seq.d/
XXXXXXXXXXTGGTGNTGCAACGGANCAAATAGTGGTGNNGCAANCTGGAGCAAATANNG
GCGCTGCAACTGNAGCAAATAGTGGTGCTGCAAACTGGTGCAAAATAGTGGAAACCAATG
CNNNTNTAAACTGGTGCTGCAAATGGAAATAATGGCGCTGCAGCTGGAGCAAATAGGTGG
TGCCGCAACTGCTGCAAATAGTGGTGCCGCAACTGCTGCAAAATAGTGGTGCCGCAACTG
CTGCAAATAGAGGAAACAATGCCGCTGCAACTGGTGCTGCAAATGGAAATAATGGCGCTG
CAGCTGGAGCAAATAGTGGTGCCGCAACTGCTGCAAATAGTGGTGCTGCAAATAGTGGTG
CTGCAACTGCTGCAAATAGTGGTGCTGCAGCTGGAGCAAATAGTGGTGCTGCAACTGCTG
CAAATAGTGGCGCTGCAACTGCTGCAAGTGGTGGAAATGGTGCAAGTGGTGCTGCAAACC
CTGGTTCAATAGTAACTCCAAATGATCAAAATGTTTCTCCATTATCGAACTCTGATGCTG
CAGCAACCGCAGCATCAACTACAGGCAGAAACCCAAGAAATCCAACAAGTAGAGCTCCAA
CGGTCACACCAACGCCAACCTCTTCAGCTGAAGAACCAGCTGCTGGTGGCGAAGATTCAA
GTGCAATCTCCAAATATAGTATTCAATCATTTGGTATCTTTGTTTTATC

---gxatxqivvxqxganxgaatxansgaanwckivetnaxxnwcckwk*wrcswsk*VV
PQLLQIVVPQLLQNSGAATAANRGNNAAATGAANGNNGAAAGANSGAATAANSGAANSGA
ATAANSGAAAGANSGAATAANSGAATAASGGNGASGAANPGSIVTPNDQNVSPLSNSDAA
ATAASTTGRNPRNPTSRAPTVTPTPTSSAEEPAAGGEDSSAISKYSIQSFGIFVL

Frame A:
---gxatxqivvxqxganxgaatxansgaanwckivetnaxxnwcckwk*wrcswsk*VV
PQLLQIVVPQLLQNSGAATAANRGNNAAATGAANGNNGAAAGANSGAATAANSGAANSGA
ATAANSGAAAGANSGAATAANSGAATAASGGNGASGAANPGSIVTPNDQNVSPLSNSDAA
ATAASTTGRNPRNPTSRAPTVTPTPTSSAEEPAAGGEDSSAISKYSIQSFGIFVL


Frame B:
---vxqrxk*wxxxleqixalqlxqivvlqtgak*wkpmxx*tgaangnngaaaganrwc
rncck*wcrncckivvpqllqieetmplqlvlqmeimalqleqivvpqllqivvlqivvl
qllqivvlqleqivvlqllqivalqllqvvemvqvvlqtlvq**lqmikmflhyrtlmlq
qpqhqlqaetqeiqqvelqrshqrqplqlknqllvakiqvqspnivfnhlvslfy


Frame C:
---xcngxnsgxaxwskxxrcnxsk*wccklvqnsgnqcxxklvlqmeimalqleqigga
ataansgaataak*wcrncck*rkqcrcnwcckwk*wrcswsk*wcrncck*wcck*wcc
ncck*wccswsk*wccncck*wrcncckwwkwckwcckpwfnsnsk*skcfsiiel*ccs
nrsinyrqkpkksnk*ssnghtnanlfs*rtscwwrrfkcnlqi*ysiiwylcfi

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SHJ605 (SHJ605Q) /CSM/SH/SHJ6-A/SHJ605Q.Seq.d/                       1314   0.0
SHK112 (SHK112Q) /CSM/SH/SHK1-A/SHK112Q.Seq.d/                       1195   0.0
SHA440 (SHA440Q) /CSM/SH/SHA4-B/SHA440Q.Seq.d/                       1195   0.0
AHL869 (AHL869Q) /CSM/AH/AHL8-C/AHL869Q.Seq.d/                       1195   0.0
CHM242 (CHM242Q) /CSM/CH/CHM2-B/CHM242Q.Seq.d/                       1185   0.0
SLH856 (SLH856Q) /CSM/SL/SLH8-C/SLH856Q.Seq.d/                       1183   0.0
CHR187 (CHR187Q) /CSM/CH/CHR1-D/CHR187Q.Seq.d/                       1172   0.0
SHC416 (SHC416Q) /CSM/SH/SHC4-A/SHC416Q.Seq.d/                       1170   0.0
SHA456 (SHA456Q) /CSM/SH/SHA4-C/SHA456Q.Seq.d/                       1164   0.0
SHD708 (SHD708Q) /CSM/SH/SHD7-A/SHD708Q.Seq.d/                       1162   0.0

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

CK783714|CK783714.1 UI-D-GC1-aau-c-07-0-UI.s1 UI-D-GC1 Alexandrium tamarense cDNA clone UI-D-GC1-aau-c-07-0-UI 3', mRNA sequence.    30   0.004  3
DT338982|DT338982.1 JBW092C02.b_012.abi Pineapple week 5-10 nematode-infected gall cDNA library Ananas comosus cDNA clone JBW092C02 similar to undiscovered sequence, mRNA sequence.    30   0.004  3
AC141063|AC141063.1 Homo sapiens chromosome 16 clone RP11-1256C5, WORKING DRAFT SEQUENCE, 11 unordered pieces.    30   0.009  3
AC141261|AC141261.1 Homo sapiens chromosome 16 clone RP11-1335J10, WORKING DRAFT SEQUENCE, 4 unordered pieces.    28   0.033  3
AC167065|AC167065.1 Xenopus tropicalis clone ISB1-217D23, WORKING DRAFT SEQUENCE, 2 unordered pieces.    28   0.038  3
AY887028|AY887028.1 Ophiostoma novo-ulmi subsp. novo-ulmi isolate R66 MAT-1-2 gene, complete cds.    34   0.20   2
AY887027|AY887027.1 Ophiostoma novo-ulmi subsp. novo-ulmi isolate YU1 MAT-1-2 gene, complete cds.    34   0.20   2
AY887029|AY887029.1 Ophiostoma novo-ulmi subsp. novo-ulmi isolate V19 MAT-1-2 gene, complete cds.    34   0.20   2
DQ013872|DQ013872.1 Ophiostoma novo-ulmi isolate V1 mating type 3' flanking region genomic sequence.    34   0.21   2
CJ765123|CJ765123.1 Ipomoea nil cDNA clone:jmsf35i02, 3' end.      48   0.28   1

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(Q54GV8) RecName: Full=Uncharacterized transmembrane protein DDB...    84   4e-15
S68824(S68824)rngB protein, cytosolic - slime mold (Dictyosteliu...    37   0.58
U87912_1(U87912|pid:none) Dictyostelium discoideum MAP kinase ki...    37   0.58
(Q7M3S9) RecName: Full=RING finger protein B;          Short=Pro...    37   0.58
FM992688_758(FM992688|pid:none) Candida dubliniensis CD36 chromo...    35   1.7
CP000471_2084(CP000471|pid:none) Magnetococcus sp. MC-1, complet...    35   2.9
(Q4P7Q1) RecName: Full=Vacuolar protein sorting-associated prote...    35   2.9
(P45447) RecName: Full=Ecdysone-induced protein 78C;          Sh...    34   3.7
AE014296_3703(AE014296|pid:none) Drosophila melanogaster chromos...    34   3.7
CR382124_127(CR382124|pid:none) Kluyveromyces lactis strain NRRL...    34   3.7

 psg: 0.81  gvh: 0.53  alm: 0.46  top: 0.53  tms: 0.00  mit: 0.16  mip: 0.05
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 44.0 %: cytoplasmic
	 24.0 %: nuclear
	  8.0 %: cytoskeletal
	  8.0 %: mitochondrial
	  4.0 %: Golgi
	  4.0 %: endoplasmic reticulum
	  4.0 %: vacuolar
	  4.0 %: vesicles of secretory system

>> prediction for SHJ605 is cyt

>SHJ605Z.Seq
NNNNNNNNNNTGGTGNTGCAACGGANCAAATAGTGGTGNNGCAANCTGGAGCAAATANNG
GCGCTGCAACTGNAGCAAATAGTGGTGCTGCAAACTGGTGCAAAATAGTGGAAACCAATG
CNNNTNTAAACTGGTGCTGCAAATGGAAATAATGGCGCTGCAGCTGGAGCAAATAGGTGG
TGCCGCAACTGCTGCAAATAGTGGTGCCGCAACTGCTGCAAAATAGTGGTGCCGCAACTG
CTGCAAATAGAGGAAACAATGCCGCTGCAACTGGTGCTGCAAATGGAAATAATGGCGCTG
CAGCTGGAGCAAATAGTGGTGCCGCAACTGCTGCAAATAGTGGTGCTGCAAATAGTGGTG
CTGCAACTGCTGCAAATAGTGGTGCTGCAGCTGGAGCAAATAGTGGTGCTGCAACTGCTG
CAAATAGTGGCGCTGCAACTGCTGCAAGTGGTGGAAATGGTGCAAGTGGTGCTGCAAACC
CTGGTTCAATAGTAACTCCAAATGATCAAAATGTTTCTCCATTATCGAACTCTGATGCTG
CAGCAACCGCAGCATCAACTACAGGCAGAAACCCAAGAAATCCAACAAGTAGAGCTCCAA
CGGTCACACCAACGCCAACCTCTTCAGCTGAAGAACCAGCTGCTGGTGGCGAAGATTCAA
GTGCAATCTCCAAATATAGTATTCAATCATTTGGTATCTTTGTTTTATC