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Dicty_cDB
Contig List | Clone List | cDNA Library List
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
SHJ602
Library SH
(Link to library)
Clone ID SHJ602
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16581-1
Original site URL
Representative seq. ID
(Link to Original site)
Representative DNA sequence 
>SHJ602 (SHJ602Q) /CSM/SH/SHJ6-A/SHJ602Q.Seq.d/
XXXXXXXXXXGCTGCAACCCGGAGGGAAATAGNGGAGGTAACAGNGGGTGCNCTCANTNT
TCAGGAAGGTAATANGGGGCGGNGNTTTCATCNTCTGGGTGGCAANNACTGGAGGTAANA
GCGGTTGGTTGACATCATCTGGTGGTAANACTGGAGGTAATAGTGGTGCTGCAACCGGAG
GGAAATAGTGGAGGTAACAGTGGTGCCTCATNTTCAGGAGGTAATAGTGGTTGGTTGACC
GGCGGTGTTANTGGTGGCAANAGTGGAGGTGNTACTGGAGGTAATAACGGTGGTGNTACT
GGAGGTAATAGTGGAGGTGCTACTGGAGGAAATAGCGGTGGTGNTACTGGAGGCAATANC
GGCGGTGNTTCATCATCTGGTGGCAATAGTGGAGGTGCTACAGGAGGTAATAGCGGTGGC
GGTACTTCAACTGAAACAACTGCCGCTCCNCCAGGTACTCCAACCAAAAAAGCTGCACCA
AAGAAACCAGCTGNTAAAGCTGNTTCAACCTCAACCAAAACTGCCGCT
sequence update 2002. 9.10
Translated Amino Acid sequence 
---cnpegnxggnxgcxxxsgr*xgaxxsssgwqxlevxavg*HHLVVXLEVIVVLQPEG
NSGGNSGASXSGGNSGWLTGGVXGGXSGGXTGGNNGGXTGGNSGGATGGNSGGXTGGNXG
GXSSSGGNSGGATGGNSGGGTSTETTAAPPGTPTKKAAPKKPAXKAXSTSTKTAA
Translated Amino Acid sequence (All Frames) 
Frame A:
---lqpggk*xr*qxvxsxfrkvixggxfixwvaxtggxsgwltssggxtggnsgaatgg
k*wr*qwclxfrr**wlvdrrcxwwqxwrxywr**rwxywr**wrcywrk*rwxywrqxr
rxfiiwwq*wrcyrr**rwryfn*nncrsxrysnqksctketsx*sxfnlnqncr


Frame B:
---cnpegnxggnxgcxxxsgr*xgaxxsssgwqxlevxavg*HHLVVXLEVIVVLQPEG
NSGGNSGASXSGGNSGWLTGGVXGGXSGGXTGGNNGGXTGGNSGGATGGNSGGXTGGNXG
GXSSSGGNSGGATGGNSGGGTSTETTAAPPGTPTKKAAPKKPAXKAXSTSTKTAA


Frame C:
---atrreixevtxgalxxqegnxgrxfhxlggxxwr*xrlvdiiww*xwr**wccnrre
ivevtvvphxqevivvg*pavlxvaxvevxlevitvvxlevivevlleeiavvxleaixa
vxhhlvaivevlqeviavavlqlkqlplxqvlqpkklhqrnqlxklxqpqpklp
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SHJ602 (SHJ602Q) /CSM/SH/SHJ6-A/SHJ602Q.Seq.d/                        884   0.0
SLD665 (SLD665Q) /CSM/SL/SLD6-C/SLD665Q.Seq.d/                        323   2e-87
SLJ468 (SLJ468Q) /CSM/SL/SLJ4-C/SLJ468Q.Seq.d/                        301   6e-81
SLJ757 (SLJ757Q) /CSM/SL/SLJ7-C/SLJ757Q.Seq.d/                        262   5e-69
SLG214 (SLG214Q) /CSM/SL/SLG2-A/SLG214Q.Seq.d/                        244   1e-63
SLC848 (SLC848Q) /CSM/SL/SLC8-B/SLC848Q.Seq.d/                        210   2e-53
SLJ187 (SLJ187Q) /CSM/SL/SLJ1-D/SLJ187Q.Seq.d/                        204   1e-51
CHP711 (CHP711Q) /CSM/CH/CHP7-A/CHP711Q.Seq.d/                        202   4e-51
VSH740 (VSH740Q) /CSM/VS/VSH7-B/VSH740Q.Seq.d/                        184   9e-46
SSM820 (SSM820Q) /CSM/SS/SSM8-A/SSM820Q.Seq.d/                        184   9e-46
own update 2002.12. 8
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

U50904|U50904.2 Dictyostelium discoideum histone H1 mRNA, complete cds.   184   1e-42  1
L33457|L33457.1 Dictyostelium discoideum (clone pBSK/HMG/ECO-XHO) histone H1 gene, complete cds.   184   1e-42  1
AX770909|AX770909.1 Sequence 40 from Patent WO02094867.            44   3.2    1
BX571870|BX571870.1 Photorhabdus luminescens subsp. laumondii TTO1 complete genome;  segment 12/17.    44   3.2    1
dna update 2006. 5.17
Homology vs Protein 

 ***** No hits found ******

Lambda     K      H
   0.318    0.134    0.401

Gapped
Lambda     K      H
   0.267   0.0410    0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3101297
Number of Hits to DB: 252,114,988
protein update 2009. 5.29
PSORT 

 psg: 0.75  gvh: 0.51  alm: 0.42  top: 0.53  tms: 0.00  mit: 0.17  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.20  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 56.0 %: cytoplasmic
	 32.0 %: nuclear
	  8.0 %: peroxisomal
	  4.0 %: mitochondrial

>> prediction for SHJ602 is cyt
5' end seq. ID -
5' end seq. -
Length of 5' end seq. -
3' end seq. ID SHJ602Z
3' end seq. 
>SHJ602Z.Seq
NNNNNNNNNNGCTGCAACCCGGAGGGAAATAGNGGAGGTAACAGNGGGTGCNCTCANTNT
TCAGGAAGGTAATANGGGGCGGNGNTTTCATCNTCTGGGTGGCAANNACTGGAGGTAANA
GCGGTTGGTTGACATCATCTGGTGGTAANACTGGAGGTAATAGTGGTGCTGCAACCGGAG
GGAAATAGTGGAGGTAACAGTGGTGCCTCATNTTCAGGAGGTAATAGTGGTTGGTTGACC
GGCGGTGTTANTGGTGGCAANAGTGGAGGTGNTACTGGAGGTAATAACGGTGGTGNTACT
GGAGGTAATAGTGGAGGTGCTACTGGAGGAAATAGCGGTGGTGNTACTGGAGGCAATANC
GGCGGTGNTTCATCATCTGGTGGCAATAGTGGAGGTGCTACAGGAGGTAATAGCGGTGGC
GGTACTTCAACTGAAACAACTGCCGCTCCNCCAGGTACTCCAACCAAAAAAGCTGCACCA
AAGAAACCAGCTGNTAAAGCTGNTTCAACCTCAACCAAAACTGCCGCT
Length of 3' end seq. 528
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -