>SHJ595 (SHJ595Q) /CSM/SH/SHJ5-D/SHJ595Q.Seq.d/
XXXXXXXXXXATATGTTGAAAGCTCATAAANAAGGTATTCGTCGTGCCGCTGTAAATACA
TTTGGTTACATTGCAAAAGCTATTGGTCCTCAAGAGGTATTGGCAACCCTATTAAACAAT
TTGAAAGTTCAAGATCGTCAAAACAGAGTTTGTACAACCGTTGCCATTGCCATTGTTGCG
GAAACTTGTGCACCTTATACCGTTTTACCAGGTCTAATCAATGAATATCGTATTCCAGAG
TTGAATGTTCAAAATGGTGTTTTGAAATCTTTATCTTTCCTCTTTGAATATATTGGCGAA
ATGGGTAAAGACTATATTTACGCCGTAACTACCCTACTCGAAGATGCACTCATGGATAGA
GATGCTGTACATCGTCAAACCGCTTGCTCTGCAATTAAACATATTTCATTGGGTGTAATG
GGTNTAGGTTGTGAAGATTCACTCACTCATTTACTCAATTACGTTTGGCCNAATGTTTTN
GAAACTTCTCCACATGT

---MLKAHKXGIRRAAVNTFGYIAKAIGPQEVLATLLNNLKVQDRQNRVCTTVAIAIVAE
TCAPYTVLPGLINEYRIPELNVQNGVLKSLSFLFEYIGEMGKDYIYAVTTLLEDALMDRD
AVHRQTACSAIKHISLGVMGXGCEDSLTHLLNYVWPNVXETSPH

Frame A:
---yvess*xrysscrckyiwlhcksywssrgignpikqfessrsskqslynrchchccg
nlctlyrftrsnq*isysrvecskwcfeififpl*iywrng*rlylrrnyptrrcthg*r
cctssnrllcn*tyfigcngxrl*rfthsftqlrlaxcfxnfstc


Frame B:
---MLKAHKXGIRRAAVNTFGYIAKAIGPQEVLATLLNNLKVQDRQNRVCTTVAIAIVAE
TCAPYTVLPGLINEYRIPELNVQNGVLKSLSFLFEYIGEMGKDYIYAVTTLLEDALMDRD
AVHRQTACSAIKHISLGVMGXGCEDSLTHLLNYVWPNVXETSPH


Frame C:
---c*klixkvfvvpl*ihlvtlqkllvlkrywqpy*ti*kfkivktefvqplplpllrk
lvhlipfyqv*smnivfqs*mfkmvf*nlylsslnilakwvktiftp*lpyskmhswiem
lyivkplalqlnifhwv*wv*vvkihsliysitfgxmfxkllhm

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

VHB738 (VHB738Q) /CSM/VH/VHB7-B/VHB738Q.Seq.d/                        942   0.0
VHA852 (VHA852Q) /CSM/VH/VHA8-C/VHA852Q.Seq.d/                        942   0.0
SHJ595 (SHJ595Q) /CSM/SH/SHJ5-D/SHJ595Q.Seq.d/                        942   0.0
SHA183 (SHA183Q) /CSM/SH/SHA1-D/SHA183Q.Seq.d/                        942   0.0
CHO828 (CHO828Q) /CSM/CH/CHO8-B/CHO828Q.Seq.d/                        942   0.0
CHM843 (CHM843Q) /CSM/CH/CHM8-B/CHM843Q.Seq.d/                        942   0.0
CHF570 (CHF570Q) /CSM/CH/CHF5-C/CHF570Q.Seq.d/                        942   0.0
AHN108 (AHN108Q) /CSM/AH/AHN1-A/AHN108Q.Seq.d/                        942   0.0
AHM695 (AHM695Q) /CSM/AH/AHM6-D/AHM695Q.Seq.d/                        942   0.0
AHM560 (AHM560Q) /CSM/AH/AHM5-C/AHM560Q.Seq.d/                        942   0.0

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

AC117082|AC117082.2 Dictyostelium discoideum chromosome 2 mapcomplement(6807709-6776860) strain AX4, complete sequence.   942   0.0    1
AU312337|AU312337.1 Elaphe quadrivirgata cDNA, clone:Eq_aB_021_F03.   109   3e-44  3
DY611266|DY611266.1 IMMUNEF045822K24 POSSUM_01-C-POSSUM-IMMUNE-2KB Trichosurus vulpecula cDNA clone 1061021063254, mRNA sequence.    92   4e-31  3
CX303109|CX303109.1 C08027F07SK PhyRootSw1 Citrus sinensis cDNA clone C08027F07, mRNA sequence.    68   1e-30  3
DV664609|DV664609.1 CGN-1811 Pericarp Coffea canephora cDNA clone cccp22c1 5', mRNA sequence.   100   3e-29  3
DY031641|DY031641.1 zfi02-5ms1-e05 Zfi02 Zamia fischeri cDNA clone zfi02-5ms1-e05 5', mRNA sequence.   105   1e-28  3
BJ615493|BJ615493.1 Xenopus laevis cDNA clone:XL172e10, 5' end.    68   1e-25  4
BJ617934|BJ617934.1 Xenopus laevis cDNA clone:XL182p08, 5' end.    68   2e-25  4
CJ466124|CJ466124.1 Macaca fascicularis mRNA, clone: QnpA-15448, 5' end, expressed in brain parietal lobe.    74   4e-24  4
DV769286|DV769286.1 ILLUMIGEN_MCQ_68109 Katze_MMTE Macaca mulatta cDNA clone IBIUW:38456 5' similar to Bases 1 to 841 highly similar to human SF3B1 (Hs.471011), mRNA sequence.    74   5e-24  4

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AP008208_305(AP008208|pid:none) Oryza sativa (japonica cultivar-...   291   7e-78
AK221391_1(AK221391|pid:none) Arabidopsis thaliana mRNA for nucl...   289   3e-77
AE014134_132(AE014134|pid:none) Drosophila melanogaster chromoso...   288   6e-77
(O57683) RecName: Full=Splicing factor 3B subunit 1; AltName: Fu...   283   1e-75
(O75533) RecName: Full=Splicing factor 3B subunit 1; AltName: Fu...   283   1e-75
CP001324_246(CP001324|pid:none) Micromonas sp. RCC299 chromosome...   278   5e-74
CP000583_21(CP000583|pid:none) Ostreococcus lucimarinus CCE9901 ...   271   5e-72
AM270010_46(AM270010|pid:none) Aspergillus niger contig An02c015...   269   2e-71
AP007159_186(AP007159|pid:none) Aspergillus oryzae RIB40 genomic...   269   2e-71
CU633899_368(CU633899|pid:none) Podospora anserina genomic DNA c...   265   4e-70

 psg: 0.83  gvh: 0.44  alm: 0.36  top: 0.53  tms: 0.00  mit: 0.29  mip: 0.08
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 40.0 %: cytoplasmic
	 32.0 %: nuclear
	 12.0 %: mitochondrial
	  8.0 %: endoplasmic reticulum
	  4.0 %: cytoskeletal
	  4.0 %: vesicles of secretory system

>> prediction for SHJ595 is cyt

>SHJ595Z.Seq
NNNNNNNNNNATATGTTGAAAGCTCATAAANAAGGTATTCGTCGTGCCGCTGTAAATACA
TTTGGTTACATTGCAAAAGCTATTGGTCCTCAAGAGGTATTGGCAACCCTATTAAACAAT
TTGAAAGTTCAAGATCGTCAAAACAGAGTTTGTACAACCGTTGCCATTGCCATTGTTGCG
GAAACTTGTGCACCTTATACCGTTTTACCAGGTCTAATCAATGAATATCGTATTCCAGAG
TTGAATGTTCAAAATGGTGTTTTGAAATCTTTATCTTTCCTCTTTGAATATATTGGCGAA
ATGGGTAAAGACTATATTTACGCCGTAACTACCCTACTCGAAGATGCACTCATGGATAGA
GATGCTGTACATCGTCAAACCGCTTGCTCTGCAATTAAACATATTTCATTGGGTGTAATG
GGTNTAGGTTGTGAAGATTCACTCACTCATTTACTCAATTACGTTTGGCCNAATGTTTTN
GAAACTTCTCCACATGT