SHJ572
Library SH
(Link to library)
Clone ID SHJ572
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16415-1
Original site URL
Representative seq. ID SHJ572P
(Link to Original site)
Representative DNA sequence
>SHJ572 (SHJ572Q) /CSM/SH/SHJ5-C/SHJ572Q.Seq.d/
ACTGTTGGCCTACTGGNATATTTTTAAAAAATGGCAACAATTGAAGNATACTTCAAAAGN
ATAATAACAATCCAATTTTAGAACGTAAAAAAGCTCCAAATAGATTATTTGTAGAAGAAG
CAATTAATGATGATAATTCAGTAGTTACATTAAATCCAGAGACAATGGATCAATTACAAT
TCTTTAGAGGTGACACACTTTTAATTAAAGGTAAAAAGAGAAGAGATACCGTTTGTATTG
TATTGTCAGATCCAACCATCGATCCATCAAAGATCCGTATGAATAAAGTTGTAAGAAATA
ATCTTCGTGTTAGATTAGGTGACATGATTTCAGTTCACCAATGTTCAGATGTTAAATATG
GCAAACGTATTCATGTGTTACCAATTGATGATACCATAGAAGGTCTCAGTGGCAATCTCT
TTGATCTTTACCTCAAACCATACTTTTTAGAAGCCTACCGTCCAGTCCGTAAGGGTGACT
TATTTTTAGTACGTGGTGGTATGAGAGCCGTAGAATTTAAAGTTGTCGAAACCGACCCAG
GTGAATATTGTATCGTTGCACCAGAGACATTTATACATTGTGAAGGTGAGGCAGTCAAGA
GAXXXXXXXXXXTTTGATAAAGCTCGTCAAGCCGCTCCATGTGTTTTGTTNTTTGATGAG
TTGGATAGTATTGCACGTTTTAGAGGTTCATCACAAGGTGATGCTGGTGGTGCTGGTGAT
ANAGTTATCAATCAAATTTTAACTGAAATGGATGGTATGAACGCCAAGAAGAACGTTTTC
ATCATTGGTGNTACCAATAGACCAGATATCATCGATCCAGNTATCCTCCGTCCAGGTNGT
TTAGATCAACTCATTTACATTCCATTACCAGATTTACCATTTNGTGTTGCCATTTTCAAG
GNTTGTTTCAATAAATCNCCAGTCGCCAAGGATGTAGATTTANAATTTTTGGGTCAAAAN
ACTCAAGGTTTTTTTGGNGCAGATTTAACTGAAATTTGTCAACGNGCCTGTAAATTAGCT
ATTNGTGAATCCATTGAAAAGGATATTGAATCCNCCAAAGCCCGTCAANAATTTGGTGAT
ACCAANATGGAAGATGACTNTGTCGATCCAGTACCAGAAATTACTNGTGATCACTTCCAA
NAAGCCATGAGATNTGNTNGTCGTTNTGTATCCGATAATGATATTAGAAAATATGAAAGC
TTTGCTCAAACTTTAGTTCAATCAANAGGTNTTGGTAATAATTTCAAATTCCCAGATCAA
GAATNTTCAGGTCAATTCAAT
sequence update 2002.10.25
Translated Amino Acid sequence
cwptgiflkngnn*XILQKXNNNPILERKKAPNRLFVEEAINDDNSVVTLNPETMDQLQF
FRGDTLLIKGKKRRDTVCIVLSDPTIDPSKIRMNKVVRNNLRVRLGDMISVHQCSDVKYG
KRIHVLPIDDTIEGLSGNLFDLYLKPYFLEAYRPVRKGDLFLVRGGMRAVEFKVVETDPG
EYCIVAPETFIHCEGEAVKR---

---FDKARQAAPCVLXFDELDSIARFRGSSQGDAGGAGDXVINQILTEMDGMNAKKNVFI
IGXTNRPDIIDPXILRPGXLDQLIYIPLPDLPFXVAIFKXCFNKSPVAKDVDLXFLGQXT
QGFFGADLTEICQRACKLAIXESIEKDIESXKARQXFGDTXMEDDXVDPVPEITXDHFQX
AMRXXXRXVSDNDIRKYESFAQTLVQSXGXGNNFKFPDQEXSGQFN


Translated Amino Acid sequence (All Frames)
Frame A:
tvgllxyf*kmatiexyfkxiitiqf*nvkklqidyl*kkqlmmiiq*lh*iqrqwinyn
slevthf*lkvkreeipfvlycqiqpsihqrsv*ikl*eiifvld*vt*fqftnvqmlnm
anvfmcyqlmip*kvsvaisliftsnhtf*kptvqsvrvtyf*yvvv*ep*nlklskptq
vnivslhqrhlyivkvrqsr---

---FDKARQAAPCVLXFDELDSIARFRGSSQGDAGGAGDXVINQILTEMDGMNAKKNVFI
IGXTNRPDIIDPXILRPGXLDQLIYIPLPDLPFXVAIFKXCFNKSPVAKDVDLXFLGQXT
QGFFGADLTEICQRACKLAIXESIEKDIESXKARQXFGDTXMEDDXVDPVPEITXDHFQX
AMRXXXRXVSDNDIRKYESFAQTLVQSXGXGNNFKFPDQEXSGQFN

Frame B:
llaywxifkkwqqlkxtskx**qsnfrt*kssk*iicrrsn****fssyiksrdngsiti
l*r*htfn*r*kekryrlycivrsnhrsikdpye*sckk*ssc*ir*hdfsspmfrc*iw
qtyscvtn**yhrrsqwqsl*slpqtilfrslpssp*g*lifstwwyesrri*scrnrpr
*ilyrctrdiytl*r*gsqe---

---liklvkplhvfcxlmswivlhvlevhhkvmlvvlvixlsikf*lkwmv*tprrtfss
lvxpidqissiqxssvqvv*insftfhyqiyhxvlpfsrxvsinxqsprm*ixnfwvkxl
kvflxqi*lkfvnxpvn*lxvnplkrilnppkpvxnlvipxwkmtxsiqyqkllvitsxk
p*dxxvvxypimilenmkallkl*fnqxvlviisnsqiknxqvns

Frame C:
cwptgiflkngnn*XILQKXNNNPILERKKAPNRLFVEEAINDDNSVVTLNPETMDQLQF
FRGDTLLIKGKKRRDTVCIVLSDPTIDPSKIRMNKVVRNNLRVRLGDMISVHQCSDVKYG
KRIHVLPIDDTIEGLSGNLFDLYLKPYFLEAYRPVRKGDLFLVRGGMRAVEFKVVETDPG
EYCIVAPETFIHCEGEAVKR---

---**ssssrsmcfvx**vg*yctf*rfitr*cwwcw*xsyqsnfn*ngwyerqeerfhh
wxyq*tryhrsxyppsrxfrsthlhsitrftixcchfqglfq*ixsrqgcrfxifgskxs
rffwxrfn*nlstxl*isyx*ih*kgy*ixqspsxiw*yqxgr*lcrsstrnyx*slpxs
hexxxsxcir**y*ki*klcsnfssixrxw**fqiprsrxfrsiq

Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

SHJ572 (SHJ572Q) /CSM/SH/SHJ5-C/SHJ572Q.Seq.d/ 2266 0.0
AHM866 (AHM866Q) /CSM/AH/AHM8-C/AHM866Q.Seq.d/ 1138 0.0
AHM341 (AHM341Q) /CSM/AH/AHM3-B/AHM341Q.Seq.d/ 1134 0.0
AFL544 (AFL544Q) /CSM/AF/AFL5-B/AFL544Q.Seq.d/ 1128 0.0
VHB764 (VHB764Q) /CSM/VH/VHB7-C/VHB764Q.Seq.d/ 1116 0.0
CHI521 (CHI521Q) /CSM/CH/CHI5-A/CHI521Q.Seq.d/ 1116 0.0
AHQ207 (AHQ207Q) /CSM/AH/AHQ2-A/AHQ207Q.Seq.d/ 1116 0.0
AHO210 (AHO210Q) /CSM/AH/AHO2-A/AHO210Q.Seq.d/ 1116 0.0
AHL249 (AHL249Q) /CSM/AH/AHL2-C/AHL249Q.Seq.d/ 1116 0.0
AHL126 (AHL126Q) /CSM/AH/AHL1-B/AHL126Q.Seq.d/ 1116 0.0

own update 2009. 4. 4
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

U83085|U83085.2 Dictyostelium discoideum cell division cycle protein 48 (cdcD) mRNA, complete cds. 1074 0.0 2
CV239703|CV239703.1 WS0233.B21_D16 PT-MB-A-13 Populus balsamifera subsp. trichocarpa cDNA clone WS0233_D16 3', mRNA sequence. 68 3e-28 5
CB814564|CB814564.1 USDA-FP_100042 Adult Alate Brown Citrus Aphid Toxoptera citricida cDNA clone WHWTC-01_D12 5', mRNA sequence. 113 2e-23 2
DV609105|DV609105.1 EST1212101 Glossina morsitans morsitans Fat body cDNA Glossina morsitans morsitans cDNA clone GLABK18 5' end, mRNA sequence. 62 3e-23 4
BG893512|BG893512.1 kt10d05.y2 Strongyloides ratti L1 pAMP1 v3 Chiapelli McCarter Strongyloides ratti cDNA 5' similar to SW:TER2_CAEEL P54812 TRANSITIONAL ENDOPLASMIC RETICULUM ATPASE HOMOLOG 2 ;, mRNA sequence. 54 5e-22 5
DV606296|DV606296.1 EST1209292 Glossina morsitans morsitans Fat body cDNA Glossina morsitans morsitans cDNA clone GLAB220 5' end, mRNA sequence. 62 9e-22 3
DV612328|DV612328.1 EST1215324 Glossina morsitans morsitans Fat body cDNA Glossina morsitans morsitans cDNA clone GLACM58 3' end, mRNA sequence. 62 1e-21 3
DV606297|DV606297.1 EST1209293 Glossina morsitans morsitans Fat body cDNA Glossina morsitans morsitans cDNA clone GLAB220 3' end, mRNA sequence. 62 1e-21 3
AL440049|AL440049.1 T7 end of clone BD0AA009F04 of library BD0AA from strain CBS 94 of Candida tropicalis. 107 1e-21 2
BE579889|BE579889.1 kq34a03.y1 TBN95TM-SSR Strongyloides stercoralis cDNA 5' similar to WP:C41C4.8 CE05402 TRANSITIONAL ENDOPLASMIC RETICULUM ATPASE HOMOLOG 2 ;, mRNA sequence. 60 2e-21 4
dna update 2006. 5.17
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

U83085_1(U83085|pid:none) Dictyostelium discoideum cell division... 368 e-100
DQ515925_1(DQ515925|pid:none) Nicotiana tabacum putative spindle... 300 5e-80
AL162751_7(AL162751|pid:none) Arabidopsis thaliana DNA chromosom... 300 9e-80
FB781796_1(FB781796|pid:none) Sequence 1069 from Patent WO200803... 298 3e-79
EU606206_1(EU606206|pid:none) Dimocarpus longan cell division cy... 296 8e-79
FB781494_1(FB781494|pid:none) Sequence 767 from Patent WO2008034... 296 8e-79
GM966461_1(GM966461|pid:none) Sequence 1793 from Patent WO200814... 296 1e-78
EU961444_1(EU961444|pid:none) Zea mays clone 235510 unknown mRNA. 296 1e-78
FB905989_1(FB905989|pid:none) Sequence 125262 from Patent WO2008... 296 1e-78
FB781564_1(FB781564|pid:none) Sequence 837 from Patent WO2008034... 296 1e-78
protein update 2009. 4.25
PSORT

psg: 0.58 gvh: 0.33 alm: 0.39 top: 0.53 tms: 0.00 mit: 0.29 mip: 0.00
nuc: 0.07 erl: 0.00 erm: 0.00 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

44.0 %: cytoplasmic
32.0 %: nuclear
8.0 %: cytoskeletal
8.0 %: mitochondrial
4.0 %: vacuolar
4.0 %: vesicles of secretory system

>> prediction for SHJ572 is cyt

5' end seq. ID SHJ572F
5' end seq.
>SHJ572F.Seq
ACTGTTGGCCTACTGGNATATTTTTAAAAAATGGCAACAATTGAAGNATACTTCAAAAGN
ATAATAACAATCCAATTTTAGAACGTAAAAAAGCTCCAAATAGATTATTTGTAGAAGAAG
CAATTAATGATGATAATTCAGTAGTTACATTAAATCCAGAGACAATGGATCAATTACAAT
TCTTTAGAGGTGACACACTTTTAATTAAAGGTAAAAAGAGAAGAGATACCGTTTGTATTG
TATTGTCAGATCCAACCATCGATCCATCAAAGATCCGTATGAATAAAGTTGTAAGAAATA
ATCTTCGTGTTAGATTAGGTGACATGATTTCAGTTCACCAATGTTCAGATGTTAAATATG
GCAAACGTATTCATGTGTTACCAATTGATGATACCATAGAAGGTCTCAGTGGCAATCTCT
TTGATCTTTACCTCAAACCATACTTTTTAGAAGCCTACCGTCCAGTCCGTAAGGGTGACT
TATTTTTAGTACGTGGTGGTATGAGAGCCGTAGAATTTAAAGTTGTCGAAACCGACCCAG
GTGAATATTGTATCGTTGCACCAGAGACATTTATACATTGTGAAGGTGAGGCAGTCAAGA
GANNNNNNNNNN
Length of 5' end seq. 612
3' end seq. ID SHJ572Z
3' end seq.
>SHJ572Z.Seq
NNNNNNNNNNTTTGATAAAGCTCGTCAAGCCGCTCCATGTGTTTTGTTNTTTGATGAGTT
GGATAGTATTGCACGTTTTAGAGGTTCATCACAAGGTGATGCTGGTGGTGCTGGTGATAN
AGTTATCAATCAAATTTTAACTGAAATGGATGGTATGAACGCCAAGAAGAACGTTTTCAT
CATTGGTGNTACCAATAGACCAGATATCATCGATCCAGNTATCCTCCGTCCAGGTNGTTT
AGATCAACTCATTTACATTCCATTACCAGATTTACCATTTNGTGTTGCCATTTTCAAGGN
TTGTTTCAATAAATCNCCAGTCGCCAAGGATGTAGATTTANAATTTTTGGGTCAAAANAC
TCAAGGTTTTTTTGGNGCAGATTTAACTGAAATTTGTCAACGNGCCTGTAAATTAGCTAT
TNGTGAATCCATTGAAAAGGATATTGAATCCNCCAAAGCCCGTCAANAATTTGGTGATAC
CAANATGGAAGATGACTNTGTCGATCCAGTACCAGAAATTACTNGTGATCACTTCCAANA
AGCCATGAGATNTGNTNGTCGTTNTGTATCCGATAATGATATTAGAAAATATGAAAGCTT
TGCTCAAACTTTAGTTCAATCAANAGGTNTTGGTAATAATTTCAAATTCCCAGATCAAGA
ATNTTCAGGTCAATTCAAT
Length of 3' end seq. 679
Connected seq. ID SHJ572P
Connected seq.
>SHJ572P.Seq
ACTGTTGGCCTACTGGNATATTTTTAAAAAATGGCAACAATTGAAGNATACTTCAAAAGN
ATAATAACAATCCAATTTTAGAACGTAAAAAAGCTCCAAATAGATTATTTGTAGAAGAAG
CAATTAATGATGATAATTCAGTAGTTACATTAAATCCAGAGACAATGGATCAATTACAAT
TCTTTAGAGGTGACACACTTTTAATTAAAGGTAAAAAGAGAAGAGATACCGTTTGTATTG
TATTGTCAGATCCAACCATCGATCCATCAAAGATCCGTATGAATAAAGTTGTAAGAAATA
ATCTTCGTGTTAGATTAGGTGACATGATTTCAGTTCACCAATGTTCAGATGTTAAATATG
GCAAACGTATTCATGTGTTACCAATTGATGATACCATAGAAGGTCTCAGTGGCAATCTCT
TTGATCTTTACCTCAAACCATACTTTTTAGAAGCCTACCGTCCAGTCCGTAAGGGTGACT
TATTTTTAGTACGTGGTGGTATGAGAGCCGTAGAATTTAAAGTTGTCGAAACCGACCCAG
GTGAATATTGTATCGTTGCACCAGAGACATTTATACATTGTGAAGGTGAGGCAGTCAAGA
GA----------TTTGATAAAGCTCGTCAAGCCGCTCCATGTGTTTTGTTNTTTGATGAG
TTGGATAGTATTGCACGTTTTAGAGGTTCATCACAAGGTGATGCTGGTGGTGCTGGTGAT
ANAGTTATCAATCAAATTTTAACTGAAATGGATGGTATGAACGCCAAGAAGAACGTTTTC
ATCATTGGTGNTACCAATAGACCAGATATCATCGATCCAGNTATCCTCCGTCCAGGTNGT
TTAGATCAACTCATTTACATTCCATTACCAGATTTACCATTTNGTGTTGCCATTTTCAAG
GNTTGTTTCAATAAATCNCCAGTCGCCAAGGATGTAGATTTANAATTTTTGGGTCAAAAN
ACTCAAGGTTTTTTTGGNGCAGATTTAACTGAAATTTGTCAACGNGCCTGTAAATTAGCT
ATTNGTGAATCCATTGAAAAGGATATTGAATCCNCCAAAGCCCGTCAANAATTTGGTGAT
ACCAANATGGAAGATGACTNTGTCGATCCAGTACCAGAAATTACTNGTGATCACTTCCAA
NAAGCCATGAGATNTGNTNGTCGTTNTGTATCCGATAATGATATTAGAAAATATGAAAGC
TTTGCTCAAACTTTAGTTCAATCAANAGGTNTTGGTAATAATTTCAAATTCCCAGATCAA
GAATNTTCAGGTCAATTCAAT
Length of connected seq. 1271
Full length Seq ID -
Full length Seq. -
Length of full length seq. -