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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
SHJ564
Library SH
(Link to library)
Clone ID SHJ564
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16471-1
Original site URL
Representative seq. ID SHJ564P
(Link to Original site)
Representative DNA sequence 
>SHJ564 (SHJ564Q) /CSM/SH/SHJ5-C/SHJ564Q.Seq.d/
CTGTTGGCCTACTGGNAAATAATAAATTTACTATCAAATAACTATTTTTTCTTTTCTTTC
TTTTTAAAGTTTAAATAATAGAAATAATAAAAATTAATATTAAAAAAAAGGAACGTTAAA
AAAAAAAXXXXXXXXXXATTGAAAGACAACAAAATGGTAATGGTTCACCTGCTGTAAACT
CTCATAAGATTGTAACTCAAATGGGAAATGTTGAAAATAATGAAATTACCAATGAACAAG
ATGCCATTGAACAAGCTCAACATTTACAACGTATTGAAAATGGTGAAGATATCGATGAGT
ATGAAGCTGCCCAACATGAAGTTGCCTTTTTAGATGAAAATGAACAAGATGCTGCTAAAT
TACAAAATGAAATGGACCAATTAGAACTCTTACTTGAAGAGAATGAAGAAGAACAATTTT
CAAATAAAAATTTACAACAACTTAATGAGAATGAAAATCAACAACAACAACAAGGACAAC
AACAAGTTCAAGCAACAAATGTTGAACAACAAATCGTTGAACAACTTAAAGTTATCAAAG
AATTTCAAAGACAAGATCAACAAAAGAAACAAAAAATTCAACAAGAGAACGATGCTGTCT
ACTTGAGTGATGTTGAAAAAGCTCAACTTGAATTGGATGCTGAATTGCGCTAAAAATAAT
AAACNAGAGAATCAAGATGAGAATTTAGTTCAAGAGANACNACAATCTCCTGNCCGAATT
AAAAATCNNAT
sequence update 2002.10.25
Translated Amino Acid sequence 
llaywxiinllsnnyfffsfflkfk**k**KLILKKRNVKKK---

---IERQQNGNGSPAVNSHKIVTQMGNVENNEITNEQDAIEQAQHLQRIENGEDIDEYEA
AQHEVAFLDENEQDAAKLQNEMDQLELLLEENEEEQFSNKNLQQLNENENQQQQQGQQQV
QATNVEQQIVEQLKVIKEFQRQDQQKKQKIQQENDAVYLSDVEKAQLELDAELR*k**tr
esr*efssrxttisxpn*ksx
Translated Amino Acid sequence (All Frames) 
Frame A:
llaywxiinllsnnyfffsfflkfk**k**KLILKKRNVKKK---

---IERQQNGNGSPAVNSHKIVTQMGNVENNEITNEQDAIEQAQHLQRIENGEDIDEYEA
AQHEVAFLDENEQDAAKLQNEMDQLELLLEENEEEQFSNKNLQQLNENENQQQQQGQQQV
QATNVEQQIVEQLKVIKEFQRQDQQKKQKIQQENDAVYLSDVEKAQLELDAELR*k**tr
esr*efssrxttisxpn*ksx

Frame B:
cwptgk**iyyqitifsflsf*slnnrnnkn*y*kkgtlkkk---

---lkdnkmvmvhll*tlirl*lkwemlkimklpmnkmplnklniynvlkmvkismsmkl
pnmklpf*mkmnkmllnykmkwtn*nsylkrmkknnfqikiynnlmrmkinnnnkdnnkf
kqqmlnnkslnnlklsknfkdkinkrnkkfnkrtmlst*vmlkklnlnwmlncaknnkxe
nqdenlvqexxqspxriknx

Frame C:
vgllxnnkftik*lfflfflfkv*iieiikinikkker*kk---

---*kttkw*wftcckls*dcnsngkc*k**nyq*trch*tsstftty*kw*ryr*v*sc
pt*sclfr*k*trcc*itk*ngpirtlt*re*rrtifk*kfttt**e*ksttttrtttss
snkc*ttnr*tt*syqrisktrstketknstrercclle*c*ksst*igc*ialkiinxr
ikmri*fkrxxnllxelkix
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SHL894 (SHL894Q) /CSM/SH/SHL8-D/SHL894Q.Seq.d/                        632   e-180
SHL875 (SHL875Q) /CSM/SH/SHL8-D/SHL875Q.Seq.d/                        632   e-180
SHL866 (SHL866Q) /CSM/SH/SHL8-C/SHL866Q.Seq.d/                        632   e-180
SHL857 (SHL857Q) /CSM/SH/SHL8-C/SHL857Q.Seq.d/                        632   e-180
SHL828 (SHL828Q) /CSM/SH/SHL8-B/SHL828Q.Seq.d/                        632   e-180
SHL815 (SHL815Q) /CSM/SH/SHL8-A/SHL815Q.Seq.d/                        632   e-180
SHL770 (SHL770Q) /CSM/SH/SHL7-C/SHL770Q.Seq.d/                        632   e-180
SHL767 (SHL767Q) /CSM/SH/SHL7-C/SHL767Q.Seq.d/                        632   e-180
SHL751 (SHL751Q) /CSM/SH/SHL7-C/SHL751Q.Seq.d/                        632   e-180
SHL740 (SHL740Q) /CSM/SH/SHL7-B/SHL740Q.Seq.d/                        632   e-180
own update 2002.12. 8
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

U25143|U25143.1 Dictyostelium discoideum cAMP-inducible prespore protein gene, complete cds.   632   0.0    4
AC117075|AC117075.2 Dictyostelium discoideum chromosome 2 map 5201047-5455781 strain AX4, complete sequence.   127   4e-25  1
DT633626|DT633626.1 EST1148557 Normalized pine embryo library, Lib_D Pinus taeda cDNA clone PIMFW90 3' end, mRNA sequence.    48   0.29   1
DT364098|DT364098.1 JGI_ANNN9278.rev ANNN Pimephales promelas Whole (L) Pimephales promelas cDNA clone ANNN9278 3', mRNA sequence.    48   0.29   1
DT347978|DT347978.1 JGI_CAAX10802.fwd CAAX Pimephales promelas testis 7-8 month adults, males and females pooled (L) Pimephales promelas cDNA clone CAAX10802 5', mRNA sequence.    48   0.29   1
DT309975|DT309975.1 JGI_CAAX1517.fwd CAAX Pimephales promelas testis 7-8 month adults, males and females pooled (L) Pimephales promelas cDNA clone CAAX1517 5', mRNA sequence.    48   0.29   1
DT309974|DT309974.1 JGI_CAAX1517.rev CAAX Pimephales promelas testis 7-8 month adults, males and females pooled (L) Pimephales promelas cDNA clone CAAX1517 3', mRNA sequence.    48   0.29   1
DR686823|DR686823.1 EST1076901 Normalized pine embryo library, Lib_D Pinus taeda cDNA clone PWABK24 3' end, mRNA sequence.    48   0.29   1
DT102344|DT102344.1 JGI_ANNN5669.rev ANNN Pimephales promelas Whole (L) Pimephales promelas cDNA clone ANNN5669 3', mRNA sequence.    48   0.29   1
CA966907|CA966907.2 CcLL10a35e10f1 Carp liver library 5 Cyprinus carpio cDNA clone 35e10 5' similar to zgc.nt BC059805, mRNA sequence.    48   0.29   1
dna update 2006. 5.16
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(P54682) RecName: Full=cAMP-inducible prespore protein D7; Flags...   194   2e-55
AP004317_15(AP004317|pid:none) Oryza sativa Japonica Group genom...    35   1.7
AF314648_2(AF314648|pid:none) Plasmodium vivax CG9 (cg9) gene, c...    35   1.7
protein update 2008.11.25
PSORT 

 psg: 0.36  gvh: 0.17  alm: 0.58  top: 0.53  tms: 0.00  mit: 0.27  mip: 0.04
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.50  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 56.0 %: nuclear
	 28.0 %: cytoplasmic
	 12.0 %: mitochondrial
	  4.0 %: plasma membrane

>> prediction for SHJ564 is nuc
5' end seq. ID SHJ564F
5' end seq. 
>SHJ564F.Seq
CTGTTGGCCTACTGGNAAATAATAAATTTACTATCAAATAACTATTTTTTCTTTTCTTTC
TTTTTAAAGTTTAAATAATAGAAATAATAAAAATTAATATTAAAAAAAAGGAACGTTAAA
AAAAAAANNNNNNNNNN
Length of 5' end seq. 137
3' end seq. ID SHJ564Z
3' end seq. 
>SHJ564Z.Seq
NNNNNNNNNNATTGAAAGACAACAAAATGGTAATGGTTCACCTGCTGTAAACTCTCATAA
GATTGTAACTCAAATGGGAAATGTTGAAAATAATGAAATTACCAATGAACAAGATGCCAT
TGAACAAGCTCAACATTTACAACGTATTGAAAATGGTGAAGATATCGATGAGTATGAAGC
TGCCCAACATGAAGTTGCCTTTTTAGATGAAAATGAACAAGATGCTGCTAAATTACAAAA
TGAAATGGACCAATTAGAACTCTTACTTGAAGAGAATGAAGAAGAACAATTTTCAAATAA
AAATTTACAACAACTTAATGAGAATGAAAATCAACAACAACAACAAGGACAACAACAAGT
TCAAGCAACAAATGTTGAACAACAAATCGTTGAACAACTTAAAGTTATCAAAGAATTTCA
AAGACAAGATCAACAAAAGAAACAAAAAATTCAACAAGAGAACGATGCTGTCTACTTGAG
TGATGTTGAAAAAGCTCAACTTGAATTGGATGCTGAATTGCGCTAAAAATAATAAACNAG
AGAATCAAGATGAGAATTTAGTTCAAGAGANACNACAATCTCCTGNCCGAATTAAAAATC
NNAT
Length of 3' end seq. 604
Connected seq. ID SHJ564P
Connected seq. 
>SHJ564P.Seq
CTGTTGGCCTACTGGNAAATAATAAATTTACTATCAAATAACTATTTTTTCTTTTCTTTC
TTTTTAAAGTTTAAATAATAGAAATAATAAAAATTAATATTAAAAAAAAGGAACGTTAAA
AAAAAAA----------ATTGAAAGACAACAAAATGGTAATGGTTCACCTGCTGTAAACT
CTCATAAGATTGTAACTCAAATGGGAAATGTTGAAAATAATGAAATTACCAATGAACAAG
ATGCCATTGAACAAGCTCAACATTTACAACGTATTGAAAATGGTGAAGATATCGATGAGT
ATGAAGCTGCCCAACATGAAGTTGCCTTTTTAGATGAAAATGAACAAGATGCTGCTAAAT
TACAAAATGAAATGGACCAATTAGAACTCTTACTTGAAGAGAATGAAGAAGAACAATTTT
CAAATAAAAATTTACAACAACTTAATGAGAATGAAAATCAACAACAACAACAAGGACAAC
AACAAGTTCAAGCAACAAATGTTGAACAACAAATCGTTGAACAACTTAAAGTTATCAAAG
AATTTCAAAGACAAGATCAACAAAAGAAACAAAAAATTCAACAAGAGAACGATGCTGTCT
ACTTGAGTGATGTTGAAAAAGCTCAACTTGAATTGGATGCTGAATTGCGCTAAAAATAAT
AAACNAGAGAATCAAGATGAGAATTTAGTTCAAGAGANACNACAATCTCCTGNCCGAATT
AAAAATCNNAT
Length of connected seq. 721
Full length Seq ID -
Full length Seq. -
Length of full length seq. -