>SHJ476 (SHJ476Q) /CSM/SH/SHJ4-D/SHJ476Q.Seq.d/
AGTGTGTTAAAAATATAAACTAAAACTAAAAAAAAAAATGAAACTTTTGTCTTCATTAAT
TATTTTTTTTGTTATTGTATTATTTTGNGTTGTTGGATCATTATCAGCATCATTATGTAA
ATATCCAGGTTATTCAACTCAAGGNGTTACAAAAACAAATAATGGTTATGAGGCAACACT
TAACCTTATTTCAGCAGGTCCATATGGTAACGATATANAACAATTAAATTTTCAATTAAC
TTTTGAAACTAGTCAAATTTTTANAGTTANAATTACTGACCCAAATAATCAAAGATGGGA
AGTCCCACCAACTGTTAATCAATTAGTTGGANAAAATCCANATTCAACTGATTATATAAT
TGAATTTACAAATAATCCATTTGGTTTTGCAGCAACTCGTATTTCAACTGGNGAAGTTTT
ATTTAATACAACTCAACCAAGNGATTGTTCATTTAATGGTTTAATTTATTCAAATTATTA
TTTAAAATTAAGTACATCATTCACAGANAGTAATCCAAATATTTATGGTTTAGGAXXXXX
XXXXX

vc*KYKLKLKKKMKLLSSLIIFFVIVLFXVVGSLSASLCKYPGYSTQGVTKTNNGYEATL
NLISAGPYGNDIXQLNFQLTFETSQIFXVXITDPNNQRWEVPPTVNQLVGXNPXSTDYII
EFTNNPFGFAATRISTGEVLFNTTQPXDCSFNGLIYSNYYLKLSTSFTXSNPNIYGL---

Frame A:
svlki*tktkkknetfvfinyffcyciilxcwiiisiim*isrlfnsrxyknk*wl*gnt
*pyfsrsiw*ryxtikfsinf*n*snfxsxny*pk*skmgsptnc*siswxksxfn*lyn
*iyk*siwfcsnsyfnwxsfi*ynstkxlfi*wfnlfkllfkikyiihrx*skylwfr--
-


Frame B:
vc*KYKLKLKKKMKLLSSLIIFFVIVLFXVVGSLSASLCKYPGYSTQGVTKTNNGYEATL
NLISAGPYGNDIXQLNFQLTFETSQIFXVXITDPNNQRWEVPPTVNQLVGXNPXSTDYII
EFTNNPFGFAATRISTGEVLFNTTQPXDCSFNGLIYSNYYLKLSTSFTXSNPNIYGL---


Frame C:
cvknin*n*kkk*nfclh*lfflllyyfxlldhyqhhyvniqviqlkxlqkqimvmrqhl
tlfqqvhmvtixnn*ifn*llklvkflxlxlltqiikdgkshqllin*lxkixiqlii*l
nlqiihlvlqqlvfqlxkfyliqlnqxivhlmv*fiqiii*n*vhhsqxviqifmv*---

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SHJ476 (SHJ476Q) /CSM/SH/SHJ4-D/SHJ476Q.Seq.d/                        888   0.0
CHM226 (CHM226Q) /CSM/CH/CHM2-B/CHM226Q.Seq.d/                        878   0.0
CHF189 (CHF189Q) /CSM/CH/CHF1-D/CHF189Q.Seq.d/                        878   0.0
SHK543 (SHK543Q) /CSM/SH/SHK5-B/SHK543Q.Seq.d/                        872   0.0
SHI850 (SHI850Q) /CSM/SH/SHI8-C/SHI850Q.Seq.d/                        872   0.0
SHI229 (SHI229Q) /CSM/SH/SHI2-B/SHI229Q.Seq.d/                        872   0.0
SHI181 (SHI181Q) /CSM/SH/SHI1-D/SHI181Q.Seq.d/                        872   0.0
SHG509 (SHG509Q) /CSM/SH/SHG5-A/SHG509Q.Seq.d/                        872   0.0
SHC441 (SHC441Q) /CSM/SH/SHC4-B/SHC441Q.Seq.d/                        872   0.0
SHA276 (SHA276Q) /CSM/SH/SHA2-D/SHA276Q.Seq.d/                        872   0.0

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

AC116032|AC116032.2 Dictyostelium discoideum chromosome 2 map 4158743-4189373 strainAX4, complete sequence.    38   0.010  3
AE014839|AE014839.1 Plasmodium falciparum 3D7 chromosome 11 section 4 of 8 of the complete sequence.    36   0.048  9
BP938217|BP938217.1 Plutella xylostella mRNA, clone: PXG-1254.     48   0.21   1
CO933003|CO933003.1 AGENCOURT_30543526 NIH_ZGC_5 Danio rerio cDNA clone IMAGE:7411907 5', mRNA sequence.    48   0.21   1
AC150891|AC150891.3 Medicago truncatula chromosome 2 BAC clone mth2-76a9, complete sequence.    48   0.21   1
CV829106|CV829106.1 ID0ACC11DC03RM1 ID0ACC Acyrthosiphon pisum cDNA clone ID0ACC11DC03 5', mRNA sequence.    36   0.42   2
DX401208|DX401208.1 GH__Sa0046F06.b1 Gossypium herbaceum WGS library Gossypium herbaceum genomic similar to Gossypium herbaceum repetitive sequence (unknown type), genomic survey sequence.    44   0.43   2
AE014822|AE014822.1 Plasmodium falciparum 3D7 chromosome 14 section 7 of 13 of the complete sequence.    32   0.45   2
BX572104|BX572104.6 Zebrafish DNA sequence from clone DKEY-5K4 in linkage group 1.    36   0.47   2
AL449924|AL449924.1 Streptococcus pneumoniae serotype 19F  *** SEQUENCING IN PROGRESS  *** from clone G54.    36   0.57   4

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BX294013_13(BX294013|pid:none) Neurospora crassa DNA linkage gro...    85   1e-15
BC115034_1(BC115034|pid:none) Homo sapiens sucrase-isomaltase (a...    81   1e-14
CU640366_6(CU640366|pid:none) Podospora anserina genomic DNA chr...    81   1e-14
BC116452_1(BC116452|pid:none) Homo sapiens sucrase-isomaltase (a...    81   1e-14
(P14410) RecName: Full=Sucrase-isomaltase, intestinal; Contains:...    81   1e-14
M22616_1(M22616|pid:none) Human sucrase-isomaltase mRNA, partial...    81   1e-14
AM920436_1367(AM920436|pid:none) Penicillium chrysogenum Wiscons...    80   4e-14
A36690(A36690) sucrose alpha-glucosidase (EC 3.2.1.48) - rat (fr...    77   2e-13
AM467592_1(AM467592|pid:none) Vitis vinifera contig VV78X160209....    77   3e-13
AP007169_394(AP007169|pid:none) Aspergillus oryzae RIB40 genomic...    77   4e-13

 psg: 1.02  gvh: 0.72  alm: 0.49  top: 0.13  tms: 0.00  mit: 0.31  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 52.0 %: extracellular, including cell wall
	 16.0 %: cytoplasmic
	 12.0 %: endoplasmic reticulum
	  8.0 %: vacuolar
	  4.0 %: mitochondrial
	  4.0 %: vesicles of secretory system
	  4.0 %: nuclear

>> prediction for SHJ476 is exc

>SHJ476F.Seq
AGTGTGTTAAAAATATAAACTAAAACTAAAAAAAAAAATGAAACTTTTGTCTTCATTAAT
TATTTTTTTTGTTATTGTATTATTTTGNGTTGTTGGATCATTATCAGCATCATTATGTAA
ATATCCAGGTTATTCAACTCAAGGNGTTACAAAAACAAATAATGGTTATGAGGCAACACT
TAACCTTATTTCAGCAGGTCCATATGGTAACGATATANAACAATTAAATTTTCAATTAAC
TTTTGAAACTAGTCAAATTTTTANAGTTANAATTACTGACCCAAATAATCAAAGATGGGA
AGTCCCACCAACTGTTAATCAATTAGTTGGANAAAATCCANATTCAACTGATTATATAAT
TGAATTTACAAATAATCCATTTGGTTTTGCAGCAACTCGTATTTCAACTGGNGAAGTTTT
ATTTAATACAACTCAACCAAGNGATTGTTCATTTAATGGTTTAATTTATTCAAATTATTA
TTTAAAATTAAGTACATCATTCACAGANAGTAATCCAAATATTTATGGTTTAGGANNNNN
NNNNN