>SHJ464 (SHJ464Q) /CSM/SH/SHJ4-C/SHJ464Q.Seq.d/
AAATAAATATTAATATCTCACACACACTCACACAAGATAATTTATATAACTTAAACAAAA
CTTTTTTTTTTTAAAGAATATTANAAATTATAACAATAGTAGTAAAAATATAAAAAAAAC
AAAANGACNGGACNCACAGGAGATGTTTCACAAGTTCACNATATTGANATTTTANCATTA
AATCCAACTGTAAATAAACATGCCACTTTTAAACCAACCATTGTNTCAAAAAAAGATAAA
NAAAATNGGGCAANACTTGACCATTGTAAAAAAGGATGTGAATTAAAAAATGATTTTGAA
NATGTTAAACCANCANCATTAACAGAGAGAGGAGCATTATTTGAATCANCAANATGTTTA
AAATGNGCANATGCNCCATGTCAAAAAGGATGTCCAACTCAATNGGATATTAAATCATTT
ATTAGTTCAATTTCAACCAAAAACTATTATGGAGCAGCAAANACAATTTTCTCTGATAAT
CCATTAGGTTTAACATGNGGTATGGTTTGNCCAGTTAGTTCATTATGTCAATATGGTTGT
AATTTANCXXXXXXXXXX

k*ilishthshkiiyit*tklfffkeyxkl*q***KYKKNKXTGXTGDVSQVHXIXILXL
NPTVNKHATFKPTIVSKKDKXNXAXLDHCKKGCELKNDFEXVKPXXLTERGALFESXXCL
KXAXAPCQKGCPTQXDIKSFISSISTKNYYGAAXTIFSDNPLGLTXGMVXPVSSLCQYGC
NL---

Frame A:
k*ilishthshkiiyit*tklfffkeyxkl*q***KYKKNKXTGXTGDVSQVHXIXILXL
NPTVNKHATFKPTIVSKKDKXNXAXLDHCKKGCELKNDFEXVKPXXLTERGALFESXXCL
KXAXAPCQKGCPTQXDIKSFISSISTKNYYGAAXTIFSDNPLGLTXGMVXPVSSLCQYGC
NL---


Frame B:
nky*ylththtr*fi*lkqnffflknixnynnssknikktkxxdxqemfhkftilxfxh*
iql*inmpllnqplxqkkixkxgqxltivkkdvn*kmilxmlnxxh*qreehylnxqxv*
nxxmxhvkkdvqlnxilnhllvqfqpktimeqqxqfsliih*v*hxvwfxqlvhyvnmvv
ix---


Frame C:
ininishtltqdnlynlnktfff*rilxiitivvki*kkqxdxthrrcftssxy*xfxik
snck*tchf*tnhcxkkr*xkxgxt*pl*krm*ikk*f*xc*txxinrersii*ixxmfk
mxxcxmskrmsnsxgy*iiy*fnfnqkllwsskxnfl**sirfnmxyglxs*fimsiwl*
f---

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

VHL776 (VHL776Q) /CSM/VH/VHL7-D/VHL776Q.Seq.d/                        668   0.0
SHJ464 (SHJ464Q) /CSM/SH/SHJ4-C/SHJ464Q.Seq.d/                        668   0.0
AHQ539 (AHQ539Q) /CSM/AH/AHQ5-B/AHQ539Q.Seq.d/                        668   0.0
SHC715 (SHC715Q) /CSM/SH/SHC7-A/SHC715Q.Seq.d/                        660   0.0
SHI837 (SHI837Q) /CSM/SH/SHI8-B/SHI837Q.Seq.d/                        656   0.0
SHE293 (SHE293Q) /CSM/SH/SHE2-D/SHE293Q.Seq.d/                        654   0.0
VHB368 (VHB368Q) /CSM/VH/VHB3-C/VHB368Q.Seq.d/                        644   0.0
SHI419 (SHI419Q) /CSM/SH/SHI4-A/SHI419Q.Seq.d/                        644   0.0
SHA519 (SHA519Q) /CSM/SH/SHA5-A/SHA519Q.Seq.d/                        626   e-179
SHE504 (SHE504Q) /CSM/SH/SHE5-A/SHE504Q.Seq.d/                        618   e-176

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

AF545064|AF545064.1 Dictyostelium discoideum dihydropyrimidine dehydrogenase (Pyd1) mRNA, complete cds.   521   0.0    2
AC055759|AC055759.17 Homo sapiens chromosome 3 clone CTC-284J2, WORKING DRAFT SEQUENCE, 7 unordered pieces.    38   0.086  5
AC120198|AC120198.2 Danio rerio clone CH211-125B19 strain Tue, WORKING DRAFT SEQUENCE, 8 ordered pieces.    48   0.22   1
BX901917|BX901917.9 Zebrafish DNA sequence from clone DKEY-32E10 in linkage group 5.    48   0.22   1
BX899180|BX899180.11 Zebrafish DNA sequence from clone DKEY-287G19 in linkage group 21.    38   0.30   4
AC125652|AC125652.4 Rattus norvegicus clone CH230-227C21, *** SEQUENCING IN PROGRESS ***, 3 unordered pieces.    32   0.46   2
BX928756|BX928756.13 Zebrafish DNA sequence from clone CH211-113K9 in linkage group 21.    38   0.65   3
AX346774|AX346774.1 Sequence 1845 from Patent WO0200928.           42   0.75   2
DR925829|DR925829.1 EST1117368 Aquilegia cDNA library Aquilegia formosa x Aquilegia pubescens cDNA clone CO1NA60, mRNA sequence.    46   0.87   1
Z70780|Z70780.2 Caenorhabditis elegans Cosmid F46B6.               46   0.87   1

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(Q55FT1) RecName: Full=Dihydropyrimidine dehydrogenase [NADP+]; ...   240   2e-62
(A8XKG6) RecName: Full=Probable dihydropyrimidine dehydrogenase ...   141   1e-32
(Q8CHR6) RecName: Full=Dihydropyrimidine dehydrogenase [NADP+]; ...   137   2e-31
AK149426_1(AK149426|pid:none) Mus musculus adult male liver tumo...   137   2e-31
DQ027826_1(DQ027826|pid:none) Drosophila melanogaster suppressor...   136   3e-31
AE014298_1350(AE014298|pid:none) Drosophila melanogaster chromos...   136   3e-31
AK291217_1(AK291217|pid:none) Homo sapiens cDNA FLJ76825 complet...   136   3e-31
AL356457_2(AL356457|pid:none) Human DNA sequence from clone RP11...   136   3e-31
EU652316_1(EU652316|pid:none) Adineta vaga dihydrogenpyrimidine ...   135   5e-31
EU850439_1(EU850439|pid:none) Adineta vaga dihydrogenpyrimidine ...   135   5e-31

 psg: 0.73  gvh: 0.43  alm: 0.48  top: 0.53  tms: 0.00  mit: 0.21  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 48.0 %: cytoplasmic
	 20.0 %: nuclear
	 12.0 %: cytoskeletal
	 12.0 %: mitochondrial
	  4.0 %: vacuolar
	  4.0 %: endoplasmic reticulum

>> prediction for SHJ464 is cyt

>SHJ464F.Seq
AAATAAATATTAATATCTCACACACACTCACACAAGATAATTTATATAACTTAAACAAAA
CTTTTTTTTTTTAAAGAATATTANAAATTATAACAATAGTAGTAAAAATATAAAAAAAAC
AAAANGACNGGACNCACAGGAGATGTTTCACAAGTTCACNATATTGANATTTTANCATTA
AATCCAACTGTAAATAAACATGCCACTTTTAAACCAACCATTGTNTCAAAAAAAGATAAA
NAAAATNGGGCAANACTTGACCATTGTAAAAAAGGATGTGAATTAAAAAATGATTTTGAA
NATGTTAAACCANCANCATTAACAGAGAGAGGAGCATTATTTGAATCANCAANATGTTTA
AAATGNGCANATGCNCCATGTCAAAAAGGATGTCCAACTCAATNGGATATTAAATCATTT
ATTAGTTCAATTTCAACCAAAAACTATTATGGAGCAGCAAANACAATTTTCTCTGATAAT
CCATTAGGTTTAACATGNGGTATGGTTTGNCCAGTTAGTTCATTATGTCAATATGGTTGT
AATTTANCNNNNNNNNNN