>SHJ450 (SHJ450Q) /CSM/SH/SHJ4-C/SHJ450Q.Seq.d/
ATTATTTTTGTACTTTTATTATTTTATTTTAATTATTATTATAATTTATCAACAACGCAT
TTTGATTATTAATATTTTTTTAATCATTAGTAAAAACACAAATAAAATTTAGTCAACATA
CAAAAAAAAAAAAAAAAAANCCCCCCAAANNAAAAAXXXXXXXXXX

LFLYFYYFILIIIIIYQQRILIINIFLIISKNTNKI*stykkkkkkxpqxk---

Frame A:
iifvlllfyfnyyynlstthfdy*yffnh**khk*nlvniqkkkkkxppxx---


Frame B:
LFLYFYYFILIIIIIYQQRILIINIFLIISKNTNKI*stykkkkkkxpqxk---


Frame C:
yfctfiilf*lll*finnaf*lliff*slvktqikfsqhtkkkkkxppkxk---

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SHJ450 (SHJ450Q) /CSM/SH/SHJ4-C/SHJ450Q.Seq.d/                        103   8e-22
SHF327 (SHF327Q) /CSM/SH/SHF3-B/SHF327Q.Seq.d/                        103   8e-22
SHD209 (SHD209Q) /CSM/SH/SHD2-A/SHD209Q.Seq.d/                        103   8e-22
SHC884 (SHC884Q) /CSM/SH/SHC8-D/SHC884Q.Seq.d/                        103   8e-22
AHP264 (AHP264Q) /CSM/AH/AHP2-C/AHP264Q.Seq.d/                        103   8e-22
AHH457 (AHH457Q) /CSM/AH/AHH4-C/AHH457Q.Seq.d/                        103   8e-22
AHC631 (AHC631Q) /CSM/AH/AHC6-B/AHC631Q.Seq.d/                         98   5e-20
SHE443 (SHE443Q) /CSM/SH/SHE4-B/SHE443Q.Seq.d/                         80   1e-14
VFO128 (VFO128Q) /CSM/VF/VFO1-B/VFO128Q.Seq.d/                         34   0.60
VSG135 (VSG135Q) /CSM/VS/VSG1-B/VSG135Q.Seq.d/                         32   2.4

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

CT868741|CT868741.3 Mouse DNA sequence *** SEQUENCING IN PROGRESS *** from clone  RP24-330B4.    44   0.92   1
AC109287|AC109287.6 Mus musculus clone RP24-212E11, WORKING DRAFT SEQUENCE, 20 unordered pieces.    44   0.92   1
AC095683|AC095683.6 Rattus norvegicus clone CH230-8O11, WORKING DRAFT SEQUENCE, 1 ordered piece.    44   0.92   1
AC095101|AC095101.5 Rattus norvegicus clone CH230-7I23, WORKING DRAFT SEQUENCE, 1 ordered piece.    44   0.92   1
CL359048|CL359048.1 RPCI44_335H13.r RPCI-44 Sus scrofa genomic clone RPCI44_335H13, genomic survey sequence.    44   0.92   1
CL353610|CL353610.1 RPCI44_403G22.r RPCI-44 Sus scrofa genomic clone RPCI44_403G22, genomic survey sequence.    44   0.92   1
CC061768|CC061768.1 MUGQ_CH252P004Q4T7_H31_CD321_053 CHORI-252 Vervet Monkey Library Cercopithecus aethiops genomic clone CH252-4F14, DNA sequence.    44   0.92   1
CZ872687|CZ872687.1 OC__Ba0271M13.r OC__Ba Oryza coarctata genomic clone OC__Ba0271M13 3', genomic survey sequence.    44   0.92   1
CZ860090|CZ860090.1 OC__Ba0252O24.r OC__Ba Oryza coarctata genomic clone OC__Ba0252O24 3', genomic survey sequence.    44   0.92   1
CZ738499|CZ738499.1 OC__Ba0076F04.f OC__Ba Oryza coarctata genomic clone OC__Ba0076F04 5', genomic survey sequence.    44   0.92   1

 ***** No hits found ******

Lambda     K      H
   0.318    0.134    0.401

Gapped
Lambda     K      H
   0.267   0.0410    0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3039690
Number of Hits to DB: 61,843,148

 psg: 1.01  gvh: 0.41  alm: 0.25  top: 0.60  tms: 0.07  mit: 0.39  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.60  pox: 0.30  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 1.00  tyr: 0.56  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 1.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 0.00 

	 28.0 %: mitochondrial
	 24.0 %: cytoplasmic
	 24.0 %: nuclear
	  8.0 %: plasma membrane
	  8.0 %: endoplasmic reticulum
	  4.0 %: vesicles of secretory system
	  4.0 %: peroxisomal

>> prediction for SHJ450 is mit

>SHJ450F.Seq
ATTATTTTTGTACTTTTATTATTTTATTTTAATTATTATTATAATTTATCAACAACGCAT
TTTGATTATTAATATTTTTTTAATCATTAGTAAAAACACAAATAAAATTTAGTCAACATA
CAAAAAAAAAAAAAAAAAANCCCCCCAAANNAAAAANNNNNNNNNN