>SHJ446 (SHJ446Q) /CSM/SH/SHJ4-B/SHJ446Q.Seq.d/
GTTCCACCATCACCACCACCACCACCAGTACAACAAATTATTAATAATGGTGCTGATGAT
AATATAACAACAACTACATTGGCAGTTAATAATATTAAAGTTTTAGAAAGTGGTGGATCA
CAACCACCATCACCAAGAAGTGGTAAAGATGTTACACATGAATTACCAATTATTAATCGT
TTAGAAATTATTCAACCAACAAGTGATGAATCATCATTAATTCAAGTTGAATTTGATCAT
AATAATCAAACTTTAGTTATAAGTGGTACTTATAAATATGGTGATTTATTANAGATTGAA
TTTGAATCACCAAAATTAATTGGTAGAGGTGCATCTGGTAAAATTTATCGTGCAAATTTA
AATGATACAATGGTTGCAGTTAAACAATTAGAAGTGGTTGGAGAGGATGCACCAAGAATT
TTCTCAGAGTTTAGAAGAGAAATTCATGTTATGTCTGATCTTAAACATTCAAACGTTGTA
AATTTATTAGGTTTTACATTATCACCATTTACAATGGTAATGGAATATATCGATTGTGGT
GATCTTCATAAATTTTTACATTCACCTATTGGTGATCAACTTAATGGTAATTGGGCTTTA
ATTTTGAAATTGGCTTTAGATATTGCAAAAGGTATGGAATTTCTTCATTCAGTTACACCA
CCATTACTTCATCGTGATXXXXXXXXXX

VPPSPPPPPVQQIINNGADDNITTTTLAVNNIKVLESGGSQPPSPRSGKDVTHELPIINR
LEIIQPTSDESSLIQVEFDHNNQTLVISGTYKYGDLLXIEFESPKLIGRGASGKIYRANL
NDTMVAVKQLEVVGEDAPRIFSEFRREIHVMSDLKHSNVVNLLGFTLSPFTMVMEYIDCG
DLHKFLHSPIGDQLNGNWALILKLALDIAKGMEFLHSVTPPLLHR---

Frame A:
VPPSPPPPPVQQIINNGADDNITTTTLAVNNIKVLESGGSQPPSPRSGKDVTHELPIINR
LEIIQPTSDESSLIQVEFDHNNQTLVISGTYKYGDLLXIEFESPKLIGRGASGKIYRANL
NDTMVAVKQLEVVGEDAPRIFSEFRREIHVMSDLKHSNVVNLLGFTLSPFTMVMEYIDCG
DLHKFLHSPIGDQLNGNWALILKLALDIAKGMEFLHSVTPPLLHR---


Frame B:
fhhhhhhhqynkllimvlmii*qqlhwqliilkf*kvvdhnhhhqevvkmlhmnyqlliv
*klfnqqvmnhh*fklnliiiikl*l*vvlinmviyxrlnlnhqn*lvevhlvkfivqi*
miqwlqlnn*kwlermhqefsqsleekfmlclilniqtl*iy*vlhyhhlqw*wnisivv
ifinfyihllvinlmvigl*f*nwl*ilqkvwnffiqlhhhyfiv---


Frame C:
stitttttsttny**wc***ynnnyigs**y*sfrkwwitttitkkw*rcyt*itny*sf
rnystnk**iiinss*i*s**snfsykwyl*iw*fixd*i*itkinw*rciw*nlsckfk
*yngcs*tirsgwrgctknflrv*krnscyv*s*tfkrckfirfyiitiyngngiyrlw*
ss*iftftyw*st*w*lgfnfeigfryckrygissfsyttitss*---

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SHJ446 (SHJ446Q) /CSM/SH/SHJ4-B/SHJ446Q.Seq.d/                       1285   0.0
VHK434 (VHK434Q) /CSM/VH/VHK4-B/VHK434Q.Seq.d/                       1255   0.0
AHE353 (AHE353Q) /CSM/AH/AHE3-C/AHE353Q.Seq.d/                       1255   0.0
AHI521 (AHI521Q) /CSM/AH/AHI5-A/AHI521Q.Seq.d/                       1160   0.0
AHQ405 (AHQ405Q) /CSM/AH/AHQ4-A/AHQ405Q.Seq.d/                       1130   0.0
AHE879 (AHE879Q) /CSM/AH/AHE8-D/AHE879Q.Seq.d/                       1057   0.0
AHH310 (AHH310Q) /CSM/AH/AHH3-A/AHH310Q.Seq.d/                       1039   0.0
SHB891 (SHB891Q) /CSM/SH/SHB8-D/SHB891Q.Seq.d/                       1023   0.0
AHK747 (AHK747Q) /CSM/AH/AHK7-B/AHK747Q.Seq.d/                        995   0.0
CHK717 (CHK717Q) /CSM/CH/CHK7-A/CHK717Q.Seq.d/                        795   0.0

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

AY232268|AY232268.1 Dictyostelium discoideum putative protein Roco6 (roco6) gene, complete cds.  1285   0.0    1
AF104635|AF104635.1 Lasioglossum pectorale cytochrome oxidase I (COI) gene, mitochondrial gene encoding mitochondrial protein, partial cds.    44   0.068  2
CX297715|CX297715.1 C06004E01SK RindPdig24 Citrus clementina cDNA clone C06004E01, mRNA sequence.    40   0.19   2
AF267225|AF267225.1 Candidatus Carsonella ruddii natural-host Tainarys sordida ATP synthase alpha subunit (atpA) gene, partial cds; ATP synthase gamma subunit (atpG) gene, complete cds; and ATP synthase beta subunit (atpD) gene, partial cds.    38   0.19   2
DU565708|DU565708.1 OO__Ba0049H02.f OO__Ba Oryza officinalis genomic clone OO__Ba0049H02 5', genomic survey sequence.    48   0.27   1
DU585527|DU585527.1 OO__Ba0077E15.r OO__Ba Oryza officinalis genomic clone OO__Ba0077E15 3', genomic survey sequence.    48   0.27   1
CZ097619|CZ097619.1 OM__Ba0103L06.r OM__Ba Oryza minuta genomic clone OM__Ba0103L06 3', genomic survey sequence.    48   0.27   1
AC116960|AC116960.2 Dictyostelium discoideum chromosome 2 map complement(1004496-821614) strain AX4, complete sequence.    42   0.41   8
CX076494|CX076494.1 UCRCS08_50C12_g Parent Washington Navel Orange Callus cDNA Library UCRCS08-2 Citrus sinensis cDNA clone UCRCS08-50C12-E24-1-5.g, mRNA sequence.    40   0.53   2
CX076493|CX076493.1 UCRCS08_50C12_b Parent Washington Navel Orange Callus cDNA Library UCRCS08-2 Citrus sinensis cDNA clone UCRCS08-50C12-E24-1-4.b, mRNA sequence.    40   0.53   2

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY232268_1(AY232268|pid:none) Dictyostelium discoideum putative ...   377   e-103
(Q55E58) RecName: Full=Probable serine/threonine-protein kinase ...    97   4e-19
AY170918_1(AY170918|pid:none) Dictyostelium discoideum pats1 gen...    97   4e-19
(Q55GE6) RecName: Full=Probable serine/threonine-protein kinase ...    81   3e-14
AY232269_1(AY232269|pid:none) Dictyostelium discoideum putative ...    81   3e-14
(Q8MVR1) RecName: Full=Cyclic GMP-binding protein C;          EC...    78   2e-13
(Q6XHB2) RecName: Full=Probable serine/threonine-protein kinase ...    77   6e-13
(Q6XHA7) RecName: Full=Probable serine/threonine-protein kinase ...    76   1e-12
(Q1ZXD6) RecName: Full=Probable serine/threonine-protein kinase ...    75   2e-12
AY042808_1(AY042808|pid:none) Arabidopsis thaliana Unknown prote...    74   3e-12

 psg: 0.78  gvh: 0.36  alm: 0.39  top: 0.53  tms: 0.00  mit: 0.22  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 60.0 %: cytoplasmic
	 32.0 %: nuclear
	  4.0 %: cytoskeletal
	  4.0 %: vesicles of secretory system

>> prediction for SHJ446 is cyt

>SHJ446F.Seq
GTTCCACCATCACCACCACCACCACCAGTACAACAAATTATTAATAATGGTGCTGATGAT
AATATAACAACAACTACATTGGCAGTTAATAATATTAAAGTTTTAGAAAGTGGTGGATCA
CAACCACCATCACCAAGAAGTGGTAAAGATGTTACACATGAATTACCAATTATTAATCGT
TTAGAAATTATTCAACCAACAAGTGATGAATCATCATTAATTCAAGTTGAATTTGATCAT
AATAATCAAACTTTAGTTATAAGTGGTACTTATAAATATGGTGATTTATTANAGATTGAA
TTTGAATCACCAAAATTAATTGGTAGAGGTGCATCTGGTAAAATTTATCGTGCAAATTTA
AATGATACAATGGTTGCAGTTAAACAATTAGAAGTGGTTGGAGAGGATGCACCAAGAATT
TTCTCAGAGTTTAGAAGAGAAATTCATGTTATGTCTGATCTTAAACATTCAAACGTTGTA
AATTTATTAGGTTTTACATTATCACCATTTACAATGGTAATGGAATATATCGATTGTGGT
GATCTTCATAAATTTTTACATTCACCTATTGGTGATCAACTTAATGGTAATTGGGCTTTA
ATTTTGAAATTGGCTTTAGATATTGCAAAAGGTATGGAATTTCTTCATTCAGTTACACCA
CCATTACTTCATCGTGATNNNNNNNNNN