>SHJ402 (SHJ402Q) /CSM/SH/SHJ4-A/SHJ402Q.Seq.d/
TGGCCTACTGGAAAAGAAAAGAAAGGAAAAAACAACCATTTATTAATTTTTGTATGATTA
TTATAATTCAAATTAAAAATATATTATATAAATATATATAAATATATATTAAATAAAAAT
AATAATAAAATAAATTTAATATAATAAAAAATTTTTTTGAGAAAAAAAAAAAANTAAAAA
AAAAAAAAAAAAAAAAACCCNAAAAAANCCNAAAAAAAAAANCCCNNNAAAAAAAXXXXX
XXXXX

aywkrkerkkqpfinfcmiiiiqiknilykyi*iyik*k***NKFNIIKNFFEKKKKXKK
KKKKKPXKXXKKKXXXK---

Frame A:
wptgkekkgknnhllifv*ll*fklkiyyiniykyilnknnnkinli**kiflrkkkx*k
kkkkknpkkxxkkxpxkk---


Frame B:
gllekkrkekttiy*flydyynsn*kyii*iyiniy*ikiiik*i*ynkkff*ekkkxkk
kkkkktxkxpkkkxpxk---


Frame C:
aywkrkerkkqpfinfcmiiiiqiknilykyi*iyik*k***NKFNIIKNFFEKKKKXKK
KKKKKPXKXXKKKXXXK---

 ***** No hits found ******

Lambda     K      H
    1.37    0.711     1.31

Gapped
Lambda     K      H
    1.37    0.711     1.31

Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 0
Number of Sequences: 97611
Number of extensions: 0
Number of successful extensions: 0
Number of sequences better than 10.0: 0
Number of HSP's better than 10.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 0
length of query: 245
length of database: 80,480,566
effective HSP length: 17
effective length of query: 228
effective length of database: 78,821,179
effective search space: 17971228812
effective search space used: 17971228812
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 16 (32.2 bits)

 ***** No hits found ******

Lambda     K      H
    1.37    0.711     1.31

Matrix: blastn matrix:1 -3
Number of Hits to DB: 0
Number of Sequences: 57092673
Number of extensions: 0
Number of successful extensions: 0
Number of sequences better than 10.0: 0
length of query: 245
length of database: 61,770,833,749
effective HSP length: 22
effective length of query: 223
effective length of database: 60,514,794,943
effective search space: 13494799272289
effective search space used: 13494799272289
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 21 (42.1 bits)

ANTI-DNA BLAST search was processed by blast@nig.ac.jp, National Institute of Genetics, Japan.

 ***** No hits found ******

Lambda     K      H
   0.300    0.131    0.435

Gapped
Lambda     K      H
   0.267   0.0410    0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3039690
Number of Hits to DB: 97,192,202

 psg: 0.12  gvh: -0.17  alm: 0.83  top: 0.53  tms: 0.00  mit: 0.28  mip: 0.00
 nuc: 0.85  erl: 0.00  erm: 0.20  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 68.0 %: nuclear
	 24.0 %: cytoplasmic
	  4.0 %: cytoskeletal
	  4.0 %: plasma membrane

>> prediction for SHJ402 is nuc

>SHJ402F.Seq
TGGCCTACTGGAAAAGAAAAGAAAGGAAAAAACAACCATTTATTAATTTTTGTATGATTA
TTATAATTCAAATTAAAAATATATTATATAAATATATATAAATATATATTAAATAAAAAT
AATAATAAAATAAATTTAATATAATAAAAAATTTTTTTGAGAAAAAAAAAAAANTAAAAA
AAAAAAAAAAAAAAAAACCCNAAAAAANCCNAAAAAAAAAANCCCNNNAAAAAAANNNNN
NNNNN