>SHJ401 (SHJ401Q) /CSM/SH/SHJ4-A/SHJ401Q.Seq.d/
CTTGAAATGTTTAAATCTTTTCAGTCAAGAGATTATTAGTCGCACAGAATTGGTATTATT
GGTAAAAGATATTTTATTACCACGTTTACCAGCATTATTTGAATGGTTCAAGTCATTTAT
TGGTGTTGATGATCAATCTATAGAACTATTGGAACGTATGGAACAATCATCACCAGGCAA
ACAAAATAATGCATGGTCAGAGATTGATTTCACCACATGTAAACGTTTGGGACCAAGTTA
TCGTGCATTACCAAAGAATTATCCACAACCAAGATGTACGGGTAGAAGTGAATTGGCAGA
GAGTGTTTTAAATGATGTTTGGGTTTCATTCCCAACTGGTAGTGAAGATTTTGGTTTCAA
GAGTCAAAGAAAGAATCAATTCGAAGAGAATCTATTCAAATGTGAGGATGAACGTTTCGA
ATTGGACTTGATCATTGAATTGAATGCCTCAACCATTAGAGTATTGGATCCAATCTTGAA
TTCATTGATTGATATGCACGATCATGAACGTCTAAACTTTAGAATGCCAAATTTAGATGT
ACTACATCATCGTTCCATCGAAAGACTTTACAATAATAAAGGTATGGAAATTATCACTGC
ACTCTACAATAATCCATTGGTATCACTACCTGTGATCTTGAAGAGATTGAAACAAAXXXX
XXXXXX

LKCLNLFSQEIISRTELVLLVKDILLPRLPALFEWFKSFIGVDDQSIELLERMEQSSPGK
QNNAWSEIDFTTCKRLGPSYRALPKNYPQPRCTGRSELAESVLNDVWVSFPTGSEDFGFK
SQRKNQFEENLFKCEDERFELDLIIELNASTIRVLDPILNSLIDMHDHERLNFRMPNLDV
LHHRSIERLYNNKGMEIITALYNNPLVSLPVILKRLKQ---

Frame A:
lemfksfqsrdy*shrigiigkryfittftsii*mvqviywc**siyrtigtygtiitrq
tk*cmvrd*fhhm*tfgtklscitkelsttkmyg*k*igrecfk*clgfipnw**rfwfq
eskkesirresiqm*g*tfrigldh*ieclnh*sigsnlefid*yars*tskl*nakfrc
ttssfhrktlq**rygnyhctlq*sigittcdleeiet---


Frame B:
LKCLNLFSQEIISRTELVLLVKDILLPRLPALFEWFKSFIGVDDQSIELLERMEQSSPGK
QNNAWSEIDFTTCKRLGPSYRALPKNYPQPRCTGRSELAESVLNDVWVSFPTGSEDFGFK
SQRKNQFEENLFKCEDERFELDLIIELNASTIRVLDPILNSLIDMHDHERLNFRMPNLDV
LHHRSIERLYNNKGMEIITALYNNPLVSLPVILKRLKQ---


Frame C:
*nv*ifsvkrllvaqnwyyw*kifyyhvyqhylngsshllvlminl*nywnvwnnhhqan
kimhgqrlisphvnvwdqvivhyqriihnqdvrvevnwqrvf*mmfgfhsqlvvkilvsr
vkerinskriysnvrmnvsnwt*sln*mpqpleywiqs*ih*lictimnv*tlecqi*my
yiivpskdftiikvwklslhstiihwyhyl*s*rd*n---

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SHJ401 (SHJ401Q) /CSM/SH/SHJ4-A/SHJ401Q.Seq.d/                       1300   0.0
FC-IC1348 (FC-IC1348Q) /CSM/FC-IC/FC-IC1348Q.Seq.d/                   549   e-155
CHK826 (CHK826Q) /CSM/CH/CHK8-B/CHK826Q.Seq.d/                        408   e-113
VSE761 (VSE761Q) /CSM/VS/VSE7-C/VSE761Q.Seq.d/                         38   0.17
VSE754 (VSE754Q) /CSM/VS/VSE7-C/VSE754Q.Seq.d/                         38   0.17
VHQ448 (VHQ448Q) /CSM/VH/VHQ4-B/VHQ448Q.Seq.d/                         38   0.17
VHO132 (VHO132Q) /CSM/VH/VHO1-B/VHO132Q.Seq.d/                         38   0.17
VHN440 (VHN440Q) /CSM/VH/VHN4-B/VHN440Q.Seq.d/                         38   0.17
VHD122 (VHD122Q) /CSM/VH/VHD1-A/VHD122Q.Seq.d/                         38   0.17
VFM219 (VFM219Q) /CSM/VF/VFM2-A/VFM219Q.Seq.d/                         38   0.17

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

DR226322|DR226322.1 5790793 CERES-AL45 Arabidopsis thaliana cDNA clone 1161972 5', mRNAsequence.    42   0.097  2
CD036035|CD036035.1 mgmt004xA15f.b Mated culture Magnaporthe grisea cDNA clone mgmt004xA15 5', mRNA sequence.    46   1.0    1
AC137044|AC137044.1 Rattus norvegicus clone CH230-unknown, *** SEQUENCING IN PROGRESS ***, 4 unordered pieces.    46   1.0    1
AX818232|AX818232.1 Sequence 103 from Patent WO03068268.           46   1.0    1
AC112439|AC112439.5 Rattus norvegicus clone CH230-147A20, *** SEQUENCING IN PROGRESS ***, 10 unordered pieces.    46   1.0    1
AL021396|AL021396.8 Human DNA sequence from clone RP5-971N18 on chromosome 20p12.  Contains pseudogene PHKBP1 (phosphorylase kinase, beta pseudogene  1), a novel gene, ESTs, STSs, GSSs and a CpG island.    46   1.0    1
AC180373|AC180373.1 Strongylocentrotus purpuratus clone R3-3009F16, WORKING DRAFT SEQUENCE, 22 unordered pieces.    44   1.7    2
DV183949|DV183949.1 CT029_B11_CT029_3700_91.ab1 C. tentans tissue culture cDNA library Chironomus tentans cDNA, mRNA sequence.    38   2.0    2
AC181881|AC181881.1 Strongylocentrotus purpuratus clone R3-1018M11, WORKING DRAFT SEQUENCE, 8 unordered pieces.    44   4.1    1
AC181021|AC181021.1 Strongylocentrotus purpuratus clone R3-3056O01, WORKING DRAFT SEQUENCE, 22 unordered pieces.    44   4.1    1

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

L38621_1(L38621|pid:none) Mus musculus clone pVZmSin3A9 Sin3A9 (...   207   2e-52
AF418569_1(AF418569|pid:none) Homo sapiens MSIN3A mRNA, complete...   207   2e-52
L36831_1(L36831|pid:none) Mus musculus transcriptional regulator...   207   2e-52
L38620_1(L38620|pid:none) Mus musculus clone pVZmSin3A Sin3A (Si...   207   2e-52
U22394_1(U22394|pid:none) Mus musculus mSin3A (sin3A) mRNA, comp...   207   2e-52
(Q60520) RecName: Full=Paired amphipathic helix protein Sin3a; A...   207   2e-52
AF154112_1(AF154112|pid:none) Xenopus laevis transcription co-re...   206   5e-52
BC139856_1(BC139856|pid:none) Danio rerio zgc:162128, mRNA (cDNA...   204   1e-51
BC170554_1(BC170554|pid:none) Xenopus laevis cDNA clone MGC:1972...   204   2e-51
BC121315_1(BC121315|pid:none) Xenopus tropicalis SIN3 homolog B,...   193   4e-48

 psg: 0.68  gvh: 0.59  alm: 0.34  top: 0.53  tms: 0.00  mit: 0.25  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.40  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 32.0 %: cytoplasmic
	 32.0 %: nuclear
	 20.0 %: mitochondrial
	  4.0 %: cytoskeletal
	  4.0 %: vacuolar
	  4.0 %: peroxisomal
	  4.0 %: endoplasmic reticulum

>> prediction for SHJ401 is cyt

>SHJ401F.Seq
CTTGAAATGTTTAAATCTTTTCAGTCAAGAGATTATTAGTCGCACAGAATTGGTATTATT
GGTAAAAGATATTTTATTACCACGTTTACCAGCATTATTTGAATGGTTCAAGTCATTTAT
TGGTGTTGATGATCAATCTATAGAACTATTGGAACGTATGGAACAATCATCACCAGGCAA
ACAAAATAATGCATGGTCAGAGATTGATTTCACCACATGTAAACGTTTGGGACCAAGTTA
TCGTGCATTACCAAAGAATTATCCACAACCAAGATGTACGGGTAGAAGTGAATTGGCAGA
GAGTGTTTTAAATGATGTTTGGGTTTCATTCCCAACTGGTAGTGAAGATTTTGGTTTCAA
GAGTCAAAGAAAGAATCAATTCGAAGAGAATCTATTCAAATGTGAGGATGAACGTTTCGA
ATTGGACTTGATCATTGAATTGAATGCCTCAACCATTAGAGTATTGGATCCAATCTTGAA
TTCATTGATTGATATGCACGATCATGAACGTCTAAACTTTAGAATGCCAAATTTAGATGT
ACTACATCATCGTTCCATCGAAAGACTTTACAATAATAAAGGTATGGAAATTATCACTGC
ACTCTACAATAATCCATTGGTATCACTACCTGTGATCTTGAAGAGATTGAAACAAANNNN
NNNNNN