NBDC - アーカイブトップ - ヘルプ
データベースの説明 | データ項目の説明 | 利用許諾 | ヘルプ
Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
NBDC - LSDB Archive
Description of this DB | Description of data items | Download | License
Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
SHJ393
Library SH
(Link to library)
Clone ID SHJ393
Atlas ID -
NBRP ID
dictyBase ID
Link to Contig Contig-U11837-1
Original site URL
Representative seq. ID
(Link to Original site)
Representative DNA sequence 
>SHJ393 (SHJ393Q) /CSM/SH/SHJ3-D/SHJ393Q.Seq.d/
TAAATGATTCGAAACAAACACATTCCCAAACTGGAAAGAAATTTCCAAAAAATTTTATTA
GGACAACCAAATATACAATTTTATCATTTATTCCAAAGAATTTATTCGAACAATTTAGAA
GATTATCAAATTTTTATTTCCTTTGTGTATTGATCATTCAATTAGTTCCACAAATCTCAC
CATTATTACCATTGACAAGTATTTTACCATTATCATTCGTATTAATTATAACGGCTACCA
AAGAGGCATTAGAAGATTATAATCGTTATCAAAGTGATAAAAAAAACAATTTAGAACCAT
ATACTATAGTGAGAGATGCTAAATTGGAGACAATATCCTCTCAAGATATATGTGTTGGTG
ATATTATCCGTATTCAAAATGGACAACAAATTCCAGCTGATTTAGTACTAATTTCAACAT
CGCATGATGAAGGTCTTTGTTATGCTGAAACCAGTAATTTAGATGGTGAAACTAATTTAA
AAGTACGTAAAGCATTAGGTGATACTAACAAACTATCGACAGCTGAAGATATCTCCCTTC
TTCGTGGTAGTATAGTTTATGAAACTCCAAATGAACGTTTATACAGATTTAATGGTAGAA
TAGTTATTCAAGGTAAAGAAAATATAATTCATTCTTTAAATCATACTATGTTTTTACXXX
XXXXXXX
sequence update 2002.10.25
Translated Amino Acid sequence 
NDSKQTHSQTGKKFPKNFIRTTKYTILSFIPKNLFEQFRRLSNFYFLCVLIIQLVPQISP
LLPLTSILPLSFVLIITATKEALEDYNRYQSDKKNNLEPYTIVRDAKLETISSQDICVGD
IIRIQNGQQIPADLVLISTSHDEGLCYAETSNLDGETNLKVRKALGDTNKLSTAEDISLL
RGSIVYETPNERLYRFNGRIVIQGKENIIHSLNHTMFL---
Translated Amino Acid sequence (All Frames) 
Frame A:
*mirnkhipklernfqkillgqpniqfyhlfqriysnnledyqifisfvy*sfn*fhksh
hyyh*qvfyhyhsy*l*rlpkrh*kiiivikvikkti*nhil**emlnwrqyplkiyvlv
ilsvfkmdnkfqli*y*fqhrmmkvfvmlkpvi*mvkli*kyvkh*viltnyrqlkispf
fvvv*fmklqmnvytdlmve*lfkvkki*fil*iilcf---


Frame B:
k*fetntfpnwkeiskkfy*dnqiynfiiyskefirti*kiikflfplcidhsisstnlt
iitidkyftiiirinyngyqrgirrl*slsk**kkqfrtiyyserc*igdnilsrymcw*
yypyskwttnss*fstnfnia**rsllc*nq*frw*n*fkst*sir*y*qtids*rylps
sw*ysl*nsk*tfiqi*w*nsysr*rkynsffksyyvf---


Frame C:
NDSKQTHSQTGKKFPKNFIRTTKYTILSFIPKNLFEQFRRLSNFYFLCVLIIQLVPQISP
LLPLTSILPLSFVLIITATKEALEDYNRYQSDKKNNLEPYTIVRDAKLETISSQDICVGD
IIRIQNGQQIPADLVLISTSHDEGLCYAETSNLDGETNLKVRKALGDTNKLSTAEDISLL
RGSIVYETPNERLYRFNGRIVIQGKENIIHSLNHTMFL---
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SHJ393 (SHJ393Q) /CSM/SH/SHJ3-D/SHJ393Q.Seq.d/                       1255   0.0
SHF440 (SHF440Q) /CSM/SH/SHF4-B/SHF440Q.Seq.d/                        145   1e-33
VHE219 (VHE219Q) /CSM/VH/VHE2-A/VHE219Q.Seq.d/                         54   3e-06
SHF716 (SHF716Q) /CSM/SH/SHF7-A/SHF716Q.Seq.d/                         54   3e-06
SHD468 (SHD468Q) /CSM/SH/SHD4-C/SHD468Q.Seq.d/                         54   3e-06
SHD378 (SHD378Q) /CSM/SH/SHD3-D/SHD378Q.Seq.d/                         54   3e-06
SHB834 (SHB834Q) /CSM/SH/SHB8-B/SHB834Q.Seq.d/                         54   3e-06
SHB172 (SHB172Q) /CSM/SH/SHB1-C/SHB172Q.Seq.d/                         54   3e-06
SHA434 (SHA434Q) /CSM/SH/SHA4-B/SHA434Q.Seq.d/                         54   3e-06
CHO377 (CHO377Q) /CSM/CH/CHO3-D/CHO377Q.Seq.d/                         54   3e-06
own update 2002.12. 7
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

AC115598|AC115598.2 Dictyostelium discoideum chromosome 2 map 581427-735498 strain AX4,complete sequence.   728   0.0    2
AR551554|AR551554.1 Sequence 6685 from patent US 6747137.          58   3e-04  1
DY586119|DY586119.1 GS01JG03 Acropora millepora presettlement library GS01 Acropora millepora cDNA clone GS01JG03, mRNA sequence.    38   0.025  2
DY586847|DY586847.1 GS01OG04 Acropora millepora presettlement library GS01 Acropora millepora cDNA clone GS01OG04, mRNA sequence.    38   0.029  2
DY587622|DY587622.1 GS01YD02 Acropora millepora presettlement library GS01 Acropora millepora cDNA clone GS01YD02, mRNA sequence.    38   0.032  2
BE675783|BE675783.1 7f15h12.x1 NCI_CGAP_CLL1 Homo sapiens cDNA clone IMAGE:3294791 3' similar to WP:Y49E10.11 CE22228 P-TYPE ATPASE ;, mRNA sequence.    50   0.067  1
AW043554|AW043554.1 wy79a07.x1 Soares_NSF_F8_9W_OT_PA_P_S1 Homo sapiens cDNA clone IMAGE:2554740 3' similar to TR:Q29449 Q29449 CHROMAFFIN GRANULE ATPASE II. ;, mRNA sequence.    50   0.067  1
DB100331|DB100331.1 Homo sapiens cDNA clone TESTI4052219, 5' end, mRNA sequence.    50   0.067  1
BX283320|BX283320.1 RZPD Homo sapiens cDNA clone IMAGp958E05760 = IMAGE:3928684 5' EST.    50   0.067  1
AI589322|AI589322.1 tr61a05.x2 NCI_CGAP_Pan1 Homo sapiens cDNA clone IMAGE:2222768 3' similar to TR:P70704 P70704 CHROMAFFIN GRANULE ATPASE II HOMOLOG. ;, mRNA sequence.    50   0.067  1
dna update 2006. 5.12
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC069264_1(BC069264|pid:none) Homo sapiens ATPase, class I, type...   162   6e-39
AK054886_1(AK054886|pid:none) Homo sapiens cDNA FLJ30324 fis, cl...   162   6e-39
(P98198) RecName: Full=Probable phospholipid-transporting ATPase...   162   6e-39
AL162591_7(AL162591|pid:none) Human DNA sequence from clone RP11...   162   6e-39
(P98199) RecName: Full=Probable phospholipid-transporting ATPase...   162   8e-39
BC168384_1(BC168384|pid:none) Synthetic construct Mus musculus c...   162   8e-39
(P98200) RecName: Full=Probable phospholipid-transporting ATPase...   161   1e-38
(Q8TF62) RecName: Full=Probable phospholipid-transporting ATPase...   160   4e-38
AF236871_1(AF236871|pid:none) Homo sapiens ML-1 protein mRNA, co...   159   7e-38
(Q9NTI2) RecName: Full=Probable phospholipid-transporting ATPase...   159   7e-38
protein update 2009. 4.23
PSORT 

 psg: 0.59  gvh: 0.61  alm: 0.26  top: 0.40  tms: 0.07  mit: 0.28  mip: 0.08
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 1.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 1.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 0.00 

	 20.0 %: cytoplasmic
	 20.0 %: endoplasmic reticulum
	 16.0 %: nuclear
	 16.0 %: mitochondrial
	 12.0 %: Golgi
	  4.0 %: peroxisomal
	  4.0 %: vacuolar
	  4.0 %: plasma membrane
	  4.0 %: vesicles of secretory system

>> prediction for SHJ393 is cyt
5' end seq. ID SHJ393F
5' end seq. 
>SHJ393F.Seq
TAAATGATTCGAAACAAACACATTCCCAAACTGGAAAGAAATTTCCAAAAAATTTTATTA
GGACAACCAAATATACAATTTTATCATTTATTCCAAAGAATTTATTCGAACAATTTAGAA
GATTATCAAATTTTTATTTCCTTTGTGTATTGATCATTCAATTAGTTCCACAAATCTCAC
CATTATTACCATTGACAAGTATTTTACCATTATCATTCGTATTAATTATAACGGCTACCA
AAGAGGCATTAGAAGATTATAATCGTTATCAAAGTGATAAAAAAAACAATTTAGAACCAT
ATACTATAGTGAGAGATGCTAAATTGGAGACAATATCCTCTCAAGATATATGTGTTGGTG
ATATTATCCGTATTCAAAATGGACAACAAATTCCAGCTGATTTAGTACTAATTTCAACAT
CGCATGATGAAGGTCTTTGTTATGCTGAAACCAGTAATTTAGATGGTGAAACTAATTTAA
AAGTACGTAAAGCATTAGGTGATACTAACAAACTATCGACAGCTGAAGATATCTCCCTTC
TTCGTGGTAGTATAGTTTATGAAACTCCAAATGAACGTTTATACAGATTTAATGGTAGAA
TAGTTATTCAAGGTAAAGAAAATATAATTCATTCTTTAAATCATACTATGTTTTTACNNN
NNNNNNN
Length of 5' end seq. 667
3' end seq. ID -
3' end seq. -
Length of 3' end seq. -
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -