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Dicty_cDB
Contig List | Clone List | cDNA Library List
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
SHJ391
Library SH
(Link to library)
Clone ID SHJ391
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16594-1
Original site URL
Representative seq. ID
(Link to Original site)
Representative DNA sequence 
>SHJ391 (SHJ391Q) /CSM/SH/SHJ3-D/SHJ391Q.Seq.d/
CNTAANCAACAAAGAGTTGAAAANGGAAAACAAATGACNCCAACAAAGCANCNCCAACAA
CAACAACAACAACAACCAATTTCAAANGGTANATTAAAAAAATTAAAAGCTCAATCAAGN
GATGAAAANAGNGGTTCAAGNGAANATGATGATGAAAATGTTGAGGATGNGGATTCATCT
GGAAGTGATAGNGGTAGTAGTGATGATGATGATGATGATGATGATGATGATGATGATGAT
GATGGNAXXXXXXXXXX
sequence update 2002.10.25
Translated Amino Acid sequence 
XXQQRVEXGKQMTPTKXXQQQQQQQPISXGXLKKLKAQSXDEXXGSXEXDDENVEDXDSS
GSDXGSSDDDDDDDDDDDDDDG---
Translated Amino Acid sequence (All Frames) 
Frame A:
XXQQRVEXGKQMTPTKXXQQQQQQQPISXGXLKKLKAQSXDEXXGSXEXDDENVEDXDSS
GSDXGSSDDDDDDDDDDDDDDG---


Frame B:
xxnkelkxenk*xqqsxxnnnnnnnqfqxvx*kn*klnqxmkxxvqxxmmmkmlrmxihl
evixvvvmmmmmmmmmmmmmm---


Frame C:
*xtks*kxktndxnkaxptttttttnfkxxikkikssikx*kxxfkxx***kc*gxgfiw
k**x****************w---
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SHJ391 (SHJ391Q) /CSM/SH/SHJ3-D/SHJ391Q.Seq.d/                        153   2e-36
SHB404 (SHB404Q) /CSM/SH/SHB4-A/SHB404Q.Seq.d/                        153   2e-36
AHK355 (AHK355Q) /CSM/AH/AHK3-C/AHK355Q.Seq.d/                        147   9e-35
SHK485 (SHK485Q) /CSM/SH/SHK4-D/SHK485Q.Seq.d/                        141   6e-33
SHF403 (SHF403Q) /CSM/SH/SHF4-A/SHF403Q.Seq.d/                        141   6e-33
CHO388 (CHO388Q) /CSM/CH/CHO3-D/CHO388Q.Seq.d/                        141   6e-33
AHJ205 (AHJ205Q) /CSM/AH/AHJ2-A/AHJ205Q.Seq.d/                        141   6e-33
AHG692 (AHG692Q) /CSM/AH/AHG6-D/AHG692Q.Seq.d/                        141   6e-33
AFD216 (AFD216Q) /CSM/AF/AFD2-A/AFD216Q.Seq.d/                        141   6e-33
CFD591 (CFD591Q) /CSM/CF/CFD5-D/CFD591Q.Seq.d/                        137   9e-32
own update 2004.12.25
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

DT351509|DT351509.1 JGI_CABS854.rev CABS Pimephales promelas kidney 7-8 month adults,3', mRNA sequence.    44   1.5    1
DT260347|DT260347.1 JGI_CAAU10866.fwd CAAU Pimephales promelas brain 7-8 month adults, males and females pooled (L) Pimephales promelas cDNA clone CAAU10866 5', mRNA sequence.    44   1.5    1
DT259149|DT259149.1 JGI_CAAU9063.rev CAAU Pimephales promelas brain 7-8 month adults, males and females pooled (L) Pimephales promelas cDNA clone CAAU9063 3', mRNA sequence.    44   1.5    1
DT257853|DT257853.1 JGI_CAAU8353.rev CAAU Pimephales promelas brain 7-8 month adults, males and females pooled (L) Pimephales promelas cDNA clone CAAU8353 3', mRNA sequence.    44   1.5    1
DT177217|DT177217.1 JGI_ANNO46026.rev ANNO Pimephales promelas Whole (M) Pimephales promelas cDNA clone ANNO46026 3', mRNA sequence.    44   1.5    1
DT249744|DT249744.1 JGI_CAAU3874.rev CAAU Pimephales promelas brain 7-8 month adults, males and females pooled (L) Pimephales promelas cDNA clone CAAU3874 3', mRNA sequence.    44   1.5    1
DT133589|DT133589.1 JGI_ANNO14749.rev ANNO Pimephales promelas Whole (M) Pimephales promelas cDNA clone ANNO14749 3', mRNA sequence.    44   1.5    1
DT134176|DT134176.1 JGI_ANNO15100.rev ANNO Pimephales promelas Whole (M) Pimephales promelas cDNA clone ANNO15100 3', mRNA sequence.    44   1.5    1
DT147558|DT147558.1 JGI_ANNO27924.rev ANNO Pimephales promelas Whole (M) Pimephales promelas cDNA clone ANNO27924 3', mRNA sequence.    44   1.5    1
DT151936|DT151936.1 JGI_ANNO30484.fwd ANNO Pimephales promelas Whole (M) Pimephales promelas cDNA clone ANNO30484 5', mRNA sequence.    44   1.5    1
dna update 2006. 5.12
Homology vs Protein 

 ***** No hits found ******

Lambda     K      H
   0.296    0.120    0.308

Gapped
Lambda     K      H
   0.267   0.0410    0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3039690
Number of Hits to DB: 63,798,495
protein update 2009. 4.23
PSORT 

 psg: 0.68  gvh: 0.34  alm: 0.72  top: 0.53  tms: 0.00  mit: 0.22  mip: 0.02
 nuc: 0.00  erl: 0.00  erm: 0.20  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 36.0 %: nuclear
	 28.0 %: cytoplasmic
	 24.0 %: mitochondrial
	 12.0 %: cytoskeletal

>> prediction for SHJ391 is nuc
5' end seq. ID SHJ391F
5' end seq. 
>SHJ391F.Seq
CNTAANCAACAAAGAGTTGAAAANGGAAAACAAATGACNCCAACAAAGCANCNCCAACAA
CAACAACAACAACAACCAATTTCAAANGGTANATTAAAAAAATTAAAAGCTCAATCAAGN
GATGAAAANAGNGGTTCAAGNGAANATGATGATGAAAATGTTGAGGATGNGGATTCATCT
GGAAGTGATAGNGGTAGTAGTGATGATGATGATGATGATGATGATGATGATGATGATGAT
GATGGNANNNNNNNNNN
Length of 5' end seq. 257
3' end seq. ID -
3' end seq. -
Length of 3' end seq. -
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -