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Dicty_cDB
Contig List | Clone List | cDNA Library List
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
SHJ356
Library SH
(Link to library)
Clone ID SHJ356
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U15728-1
Original site URL
Representative seq. ID
(Link to Original site)
Representative DNA sequence 
>SHJ356 (SHJ356Q) /CSM/SH/SHJ3-C/SHJ356Q.Seq.d/
AACTTACAACCCCACCACATTTATATATAAATTTTGTACATATAATATATATATTTGAAC
AAAAAAAAAAAAAAAANCCCCCAAAAAAAAAAANCCAAAAAAAAAAXXXXXXXXXX
sequence update 2002.10.25
Translated Amino Acid sequence 
LTTPPHLYINFVHIIYIFEQKKKKXPPKKKXQKK---
Translated Amino Acid sequence (All Frames) 
Frame A:
nlqphhiyi*ilyi*yiylnkkkkkxpqkkkxkkk---


Frame B:
tynpttfiykfctyniyi*tkkkkkxpkkkxpkk---


Frame C:
LTTPPHLYINFVHIIYIFEQKKKKXPPKKKXQKK---
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SHJ356 (SHJ356Q) /CSM/SH/SHJ3-C/SHJ356Q.Seq.d/                         42   0.002
SHF348 (SHF348Q) /CSM/SH/SHF3-B/SHF348Q.Seq.d/                         42   0.002
SFE694 (SFE694Q) /CSM/SF/SFE6-D/SFE694Q.Seq.d/                         42   0.002
CHP581 (CHP581Q) /CSM/CH/CHP5-D/CHP581Q.Seq.d/                         42   0.002
CHO708 (CHO708Q) /CSM/CH/CHO7-A/CHO708Q.Seq.d/                         42   0.002
CHN491 (CHN491Q) /CSM/CH/CHN4-D/CHN491Q.Seq.d/                         42   0.002
AHC795 (AHC795Q) /CSM/AH/AHC7-D/AHC795Q.Seq.d/                         42   0.002
own update 2002.12. 7
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

BP099464|BP099464.1 Chaetomium globosum mRNA, clone: rchaeb0_001475.y1.abd, 5' end.    40   9.4    1
dna update 2003. 5.13
Homology vs Protein 

 ***** No hits found ******

Lambda     K      H
   0.314    0.130    0.460

Gapped
Lambda     K      H
   0.267   0.0410    0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3039690
Number of Hits to DB: 97,746,663
protein update 2009. 4.22
PSORT 

 psg: 0.92  gvh: 0.19  alm: 0.46  top: 0.67  tms: 0.00  mit: 0.26  mip: 0.00
 nuc: 0.31  erl: 0.00  erm: 0.40  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 72.0 %: nuclear
	 20.0 %: cytoplasmic
	  4.0 %: plasma membrane
	  4.0 %: peroxisomal

>> prediction for SHJ356 is nuc
5' end seq. ID SHJ356F
5' end seq. 
>SHJ356F.Seq
AACTTACAACCCCACCACATTTATATATAAATTTTGTACATATAATATATATATTTGAAC
AAAAAAAAAAAAAAAANCCCCCAAAAAAAAAAANCCAAAAAAAAAANNNNNNNNNN
Length of 5' end seq. 116
3' end seq. ID -
3' end seq. -
Length of 3' end seq. -
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -