>SHJ347 (SHJ347Q) /CSM/SH/SHJ3-B/SHJ347Q.Seq.d/
AATGAAACAAAAATAAAATAATAAATTTACTATCAAATAACTATTTTTTCTTTTCTTTCT
TTTTAAAGTTTAAATAATAGAAATAATAAAAATTAATATTAAAAAAAAGGAACGTTAAAA
AAAAAAXXXXXXXXXX

*NKNKIINLLSNNYFFFSFFLKFK**k**klilkkrnvkkk---

Frame A:
netkik**iyyqitifsflsf*slnnrnnkn*y*kkgtlkk---


Frame B:
mkqk*nnkftik*lfflfflfkv*iieiikinikkker*kk---


Frame C:
*NKNKIINLLSNNYFFFSFFLKFK**k**klilkkrnvkkk---

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SHJ347 (SHJ347Q) /CSM/SH/SHJ3-B/SHJ347Q.Seq.d/                         86   1e-16
SHA230 (SHA230Q) /CSM/SH/SHA2-B/SHA230Q.Seq.d/                         64   5e-10
SHL151 (SHL151Q) /CSM/SH/SHL1-C/SHL151Q.Seq.d/                         62   2e-09
SHL106 (SHL106Q) /CSM/SH/SHL1-A/SHL106Q.Seq.d/                         62   2e-09
SHE537 (SHE537Q) /CSM/SH/SHE5-B/SHE537Q.Seq.d/                         62   2e-09
CHK135 (CHK135Q) /CSM/CH/CHK1-B/CHK135Q.Seq.d/                         62   2e-09
CHJ190 (CHJ190Q) /CSM/CH/CHJ1-D/CHJ190Q.Seq.d/                         62   2e-09
CHJ132 (CHJ132Q) /CSM/CH/CHJ1-B/CHJ132Q.Seq.d/                         62   2e-09
CHF892 (CHF892Q) /CSM/CH/CHF8-D/CHF892Q.Seq.d/                         62   2e-09
CHF366 (CHF366Q) /CSM/CH/CHF3-C/CHF366Q.Seq.d/                         62   2e-09

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

U25143|U25143.1 Dictyostelium discoideum cAMP-inducible prespore protein gene, complete cds.    62   3e-06  1
DV142218|DV142218.1 CV03130B1B09.f1 CV03-normalized library Euphorbia esula cDNA clone CV03130B1B09.f1 5, mRNA sequence.    48   0.047  1
DV141527|DV141527.1 CV03128B1D12.f1 CV03-normalized library Euphorbia esula cDNA clone CV03128B1D12.f1 5, mRNA sequence.    48   0.047  1
DV139338|DV139338.1 CV03122B1A06.f1 CV03-normalized library Euphorbia esula cDNA clone CV03122B1A06.f1 5, mRNA sequence.    48   0.047  1
DV134714|DV134714.1 CV03109A2D06.f1 CV03-normalized library Euphorbia esula cDNA clone CV03109A2D06.f1 5, mRNA sequence.    48   0.047  1
CP000102|CP000102.1 Methanosphaera stadtmanae DSM 3091, complete genome.    48   0.047  1
AC147387|AC147387.2 Pan troglodytes BAC clone RP43-143N10 from 7, complete sequence.    48   0.047  1
AC008038|AC008038.1 Homo sapiens clone RP11-371A22 from 7q31, complete sequence.    48   0.047  1
CQ986579|CQ986579.1 Sequence 123 from Patent WO2005001142.         36   0.062  2
CQ986575|CQ986575.1 Sequence 119 from Patent WO2005001142.         36   0.062  2

 ***** No hits found ******

Lambda     K      H
   0.318    0.134    0.401

Gapped
Lambda     K      H
   0.267   0.0410    0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3039690
Number of Hits to DB: 42,726,521

 psg: 0.97  gvh: 0.21  alm: 0.45  top: 0.47  tms: 0.00  mit: 0.38  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.20  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 36.0 %: nuclear
	 32.0 %: cytoplasmic
	 16.0 %: mitochondrial
	  8.0 %: cytoskeletal
	  4.0 %: vacuolar
	  4.0 %: extracellular, including cell wall

>> prediction for SHJ347 is nuc

>SHJ347F.Seq
AATGAAACAAAAATAAAATAATAAATTTACTATCAAATAACTATTTTTTCTTTTCTTTCT
TTTTAAAGTTTAAATAATAGAAATAATAAAAATTAATATTAAAAAAAAGGAACGTTAAAA
AAAAAANNNNNNNNNN