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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
SHJ334
Library SH
(Link to library)
Clone ID SHJ334
Atlas ID -
NBRP ID
dictyBase ID
Link to Contig Contig-U15814-1
Original site URL
Representative seq. ID
(Link to Original site)
Representative DNA sequence 
>SHJ334 (SHJ334Q) /CSM/SH/SHJ3-B/SHJ334Q.Seq.d/
ACATCTCAACAATTTAAATTTTTATCACAACATTCTTTTTTTTTATTATCATGCACAAAA
ACAACAACAACAATAATTATAGAGAAAATTTTGAAAAAAAAAAATCTATANAATTAATAA
CTGAAAATGAATTTAATAAATTTACATTATATAAATTTCAATGTATGGCTGAAGTTGCCA
AAGAAATATTAAGAGATTTATTAAAGGAAAGATATTTAAAAGAAACAGGTANAGAATGGG
ANAATAATAGTTTTACTGGNGTTANATATCTAATTCAAAANCAACCAATAAATAAAGACT
CTTTTGAAATTGGTANAAAATTAATGAAAGAGTACTTAACAGTNTTAAAACCCACCTTTA
ATGGNGATATTGAAATTGATTTTTTAGTTGACNCNCTTCAAATNCCAAAAGATCAACANC
ANCAAGAAAATTGNGXXXXXXXXXX
sequence update 2002.10.25
Translated Amino Acid sequence 
isti*IFITTFFFFIIMHKNNNNNNYRENFEKKKSIXLITENEFNKFTLYKFQCMAEVAK
EILRDLLKERYLKETGXEWXNNSFTGVXYLIQXQPINKDSFEIGXKLMKEYLTVLKPTFN
GDIEIDFLVDXLQXPKDQXXQENX---
Translated Amino Acid sequence (All Frames) 
Frame A:
tsqqfkflsqhsffllsctkttttiiiekilkkknlxn**lkmnlinlhyinfnvwlklp
kky*eiy*rkdi*kkqvxngxiivllxlxi*fkxnq*iktllklvxn**kst*qx*nppl
mxilklif*ltxfkxqkinxxkki---


Frame B:
hlnnlnfyhnilffyyhaqkqqqq*l*rkf*kkkiyxinn*k*i**iyii*ismyg*scq
rnikrfikgkifkrnrxrmgx**fywxxisnskxtnk*rlf*nwxkinervlnsxkthl*
wxy*n*ffs*xxsnxkrstxxrkl---


Frame C:
isti*IFITTFFFFIIMHKNNNNNNYRENFEKKKSIXLITENEFNKFTLYKFQCMAEVAK
EILRDLLKERYLKETGXEWXNNSFTGVXYLIQXQPINKDSFEIGXKLMKEYLTVLKPTFN
GDIEIDFLVDXLQXPKDQXXQENX---
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SHJ334 (SHJ334Q) /CSM/SH/SHJ3-B/SHJ334Q.Seq.d/                        656   0.0
AHQ164 (AHQ164Q) /CSM/AH/AHQ1-C/AHQ164Q.Seq.d/                        630   e-180
VHL553 (VHL553Q) /CSM/VH/VHL5-C/VHL553Q.Seq.d/                        620   e-177
AHF874 (AHF874Q) /CSM/AH/AHF8-D/AHF874Q.Seq.d/                        611   e-174
VHM486 (VHM486Q) /CSM/VH/VHM4-D/VHM486Q.Seq.d/                        611   e-174
AHF874 (AHF874Q) /CSM/AH/AHF8-D/AHF874Q.Seq.d/                        611   e-174
VHB695 (VHB695Q) /CSM/VH/VHB6-D/VHB695Q.Seq.d/                        607   e-173
VHE454 (VHE454Q) /CSM/VH/VHE4-C/VHE454Q.Seq.d/                        599   e-170
VHA673 (VHA673Q) /CSM/VH/VHA6-D/VHA673Q.Seq.d/                        599   e-170
own update 2009. 4. 4
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

DT587939|DT587939.1 she01-26ms2-b07 She01 Saruma henryi cDNA clone she01-26ms2-b07 5',mRNA sequence.    52   0.011  1
CN448467|CN448467.1 GUO_cDNA_13_39 Flower bud cDNA library from Lycoris longituba Lycoris longituba cDNA clone GUO_cDNA_13_39.T3_036.ab1, mRNA sequence.    52   0.011  1
CN448466|CN448466.1 GUO_cDNA_22_60 Flower bud cDNA library from Lycoris longituba Lycoris longituba cDNA clone GUO_cDNA_22_60.T3_062.ab1, mRNA sequence.    52   0.011  1
AF003151|AF003151.3 Caenorhabditis elegans cosmid D1007, complete sequence.    36   0.011  5
AC068478|AC068478.3 Homo sapiens chromosome 4 clone RP11-393M11 map 4, WORKING DRAFT SEQUENCE, 13 unordered pieces.    44   0.023  3
AC149544|AC149544.1 Populus balsamifera subsp. trichocarpa clone Pop1-69J1, complete sequence.    36   0.023  6
AC113454|AC113454.8 Mus musculus chromosome 3 clone RP24-176I19 map 3, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces.    42   0.033  3
AC007890|AC007890.6 Drosophila melanogaster clone BACR02G21, complete sequence.    40   0.034  4
CL935046|CL935046.1 OA_ABa0045B15.f OA_ABa Oryza australiensis genomic clone OA_ABa0045B15 5', genomic survey sequence.    40   0.035  2
EB616248|EB616248.1 AGENCOURT_54970698 D. mojavensis EST Drosophila mojavensis cDNA clone 163143_D.MOJAVENSIS_CDNA_PLATE-041_C20 5', mRNA sequence.    50   0.044  1
dna update 2006. 5.11
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AP004648_9(AP004648|pid:none) Oryza sativa Japonica Group genomi...    33   3.8
AB0294(AB0294) pyruvate, water dikinase (EC 2.7.9.2) [imported] ...    32   8.4
protein update 2008.11.22
PSORT 

 psg: 1.02  gvh: 0.36  alm: 0.47  top: 0.57  tms: 0.00  mit: 0.31  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 48.0 %: cytoplasmic
	 20.0 %: nuclear
	 16.0 %: mitochondrial
	  8.0 %: cytoskeletal
	  4.0 %: plasma membrane
	  4.0 %: endoplasmic reticulum

>> prediction for SHJ334 is cyt
5' end seq. ID SHJ334F
5' end seq. 
>SHJ334F.Seq
ACATCTCAACAATTTAAATTTTTATCACAACATTCTTTTTTTTTATTATCATGCACAAAA
ACAACAACAACAATAATTATAGAGAAAATTTTGAAAAAAAAAAATCTATANAATTAATAA
CTGAAAATGAATTTAATAAATTTACATTATATAAATTTCAATGTATGGCTGAAGTTGCCA
AAGAAATATTAAGAGATTTATTAAAGGAAAGATATTTAAAAGAAACAGGTANAGAATGGG
ANAATAATAGTTTTACTGGNGTTANATATCTAATTCAAAANCAACCAATAAATAAAGACT
CTTTTGAAATTGGTANAAAATTAATGAAAGAGTACTTAACAGTNTTAAAACCCACCTTTA
ATGGNGATATTGAAATTGATTTTTTAGTTGACNCNCTTCAAATNCCAAAAGATCAACANC
ANCAAGAAAATTGNGNNNNNNNNNN
Length of 5' end seq. 445
3' end seq. ID -
3' end seq. -
Length of 3' end seq. -
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -