>SHJ286 (SHJ286Q) /CSM/SH/SHJ2-D/SHJ286Q.Seq.d/
AAAAAGAAAAATGGCAACAAAAAATACATCTCCTTATGAGATTGAATATGCAAAGAGTGA
TAGATCAACATGTTCAACCTGTCAAAGAGGTATTAATAAAGAAGCAGTTCGTATTGGTTA
TAAAACAAAATCAAAACACTTTGATGGAATGGATGTATCATGGCATCATTTAAAATGTAA
ATGTCCACAAGTACCATCATTTACAGATTTAATTCACTGGGAATACCTTCGTTGGGAAGA
CCAATTATCAATTAAAACAACTTATTTTTCATCTGAAAAGTATGATCCAAAATCAGCATC
AGAGGTACAAAGAGAGAAATATTTAAAGGCATTATGGGAAGTTAAAGATAGTATTGCCGA
TAACTTGAAGGGACCAGCAATTAAAAACATCATTCAATATAATAAAGGTTATGTTGATAA
GGCATCACCAGTTCATTTACTTCATACTCTCTCTGATTGGATGTTAAAAGGTCGTCCAGG
TAGATGTCCAACTTGTAAGAATTTCGATATACTTTTCAATGGTATCGAATATCAATGTAA
AGGTTGGATTTCAGGTTTCACAAAATGTGATTGGAAAGGTGATTCAATTGAAAGATGGGC
TGTTCAATTTCCTGATGATCTTTCAXXXXXXXXXX

KRKMATKNTSPYEIEYAKSDRSTCSTCQRGINKEAVRIGYKTKSKHFDGMDVSWHHLKCK
CPQVPSFTDLIHWEYLRWEDQLSIKTTYFSSEKYDPKSASEVQREKYLKALWEVKDSIAD
NLKGPAIKNIIQYNKGYVDKASPVHLLHTLSDWMLKGRPGRCPTCKNFDILFNGIEYQCK
GWISGFTKCDWKGDSIERWAVQFPDDL---

Frame A:
kkkngnkkyisl*d*icke**inmfnlskry**rsssywl*nkiktl*wngcimasfkm*
mststiiyrfnslgipslgrpiin*nnlffi*kv*skisirgtkreifkgimgs*r*ycr
*legtsn*khhsi**rlc**gitssftsysl*ldvkrssr*msnl*efrytfqwyrism*
rldfrfhkm*ler*fn*kmgcsis**sf---


Frame B:
KRKMATKNTSPYEIEYAKSDRSTCSTCQRGINKEAVRIGYKTKSKHFDGMDVSWHHLKCK
CPQVPSFTDLIHWEYLRWEDQLSIKTTYFSSEKYDPKSASEVQREKYLKALWEVKDSIAD
NLKGPAIKNIIQYNKGYVDKASPVHLLHTLSDWMLKGRPGRCPTCKNFDILFNGIEYQCK
GWISGFTKCDWKGDSIERWAVQFPDDL---


Frame C:
kekwqqkihllmrlnmqrvidqhvqpvkevlikkqfvlvikqnqntlmewmyhgii*nvn
vhkyhhlqi*ftgntfvgktnyqlkqlifhlksmiqnqhqrykerni*rhygklkivlpi
t*rdqqlktsfniikvmlirhhqfiyfilsligc*kvvqvdvqlvrisiyfsmvsninvk
vgfqvsqnvigkviqlkdglfnflmif---

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SHJ286 (SHJ286Q) /CSM/SH/SHJ2-D/SHJ286Q.Seq.d/                       1191   0.0
SHJ436 (SHJ436Q) /CSM/SH/SHJ4-B/SHJ436Q.Seq.d/                       1183   0.0
SHF645 (SHF645Q) /CSM/SH/SHF6-B/SHF645Q.Seq.d/                       1183   0.0
SHD815 (SHD815Q) /CSM/SH/SHD8-A/SHD815Q.Seq.d/                       1183   0.0
SHC833 (SHC833Q) /CSM/SH/SHC8-B/SHC833Q.Seq.d/                       1183   0.0
SHC829 (SHC829Q) /CSM/SH/SHC8-B/SHC829Q.Seq.d/                       1183   0.0
CHQ835 (CHQ835Q) /CSM/CH/CHQ8-B/CHQ835Q.Seq.d/                       1183   0.0
CHQ634 (CHQ634Q) /CSM/CH/CHQ6-B/CHQ634Q.Seq.d/                       1183   0.0
CHH590 (CHH590Q) /CSM/CH/CHH5-D/CHH590Q.Seq.d/                       1183   0.0
AHN542 (AHN542Q) /CSM/AH/AHN5-B/AHN542Q.Seq.d/                       1183   0.0

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

AJ534948|AJ534948.1 Dictyostelium discoideum mRNA for NAD(+) ADP-ribosyltransferase-1A (adprt-1A gene).  1183   0.0    1
AM113503|AM113503.1 Streptococcus sp. 2410 lytA gene for N-acetylmuramoyl-L-alanine  amidase, strain 2410.    50   0.063  1
AM113502|AM113502.1 Streptococcus sp. 3137 lytA gene for N-acetylmuramoyl-L-alanine  amidase, strain 3137.    50   0.063  1
AM113501|AM113501.1 Streptococcus sp. 1956 lytA gene for N-acetylmuramoyl-L-alanine  amidase, strain 1956.    50   0.063  1
AM113500|AM113500.1 Streptococcus sp. 1504 lytA gene for N-acetylmuramoyl-L-alanine  amidase, strain 1504.    50   0.063  1
AM113497|AM113497.1 Streptococcus sp. 578 lytA gene for N-acetylmuramoyl-L-alanine  amidase, strain 578.    50   0.063  1
AM113496|AM113496.1 Streptococcus pseudopneumoniae lytA gene for  N-acetylmuramoyl-L-alanine amidase, strain CCUG 48465.    50   0.063  1
AM113495|AM113495.1 Streptococcus pseudopneumoniae lytA gene for  N-acetylmuramoyl-L-alanine amidase, type strain CCUG 49455.    50   0.063  1
AC117710|AC117710.3 Mus musculus clone RP23-480H15, WORKING DRAFT SEQUENCE, 5 unordered pieces.    40   0.38   5
CV073532|CV073532.1 AGENCOURT_31394090 NICHD_XGC_Te2 Xenopus laevis cDNA clone IMAGE:7394060 5', mRNA sequence.    36   0.52   2

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(Q9ZP54) RecName: Full=Poly [ADP-ribose] polymerase 1;          ...    75   2e-12
(P26446) RecName: Full=Poly [ADP-ribose] polymerase 1;          ...    72   2e-11
(Q7EYV7) RecName: Full=Poly [ADP-ribose] polymerase 1;          ...    70   5e-11
(Q9ZSV1) RecName: Full=Poly [ADP-ribose] polymerase 1;          ...    69   8e-11
(P18493) RecName: Full=Poly [ADP-ribose] polymerase 1;          ...    69   1e-10
GM894209_1(GM894209|pid:none) Sequence 10 from Patent EP1997899.       69   1e-10
AJ222589_1(AJ222589|pid:none) Zea mays mRNA for poly(ADP-ribose)...    69   1e-10
(P35875) RecName: Full=Poly [ADP-ribose] polymerase;          Sh...    67   3e-10
AM427768_1(AM427768|pid:none) Vitis vinifera contig VV78X161143....    67   4e-10
(Q11208) RecName: Full=Poly [ADP-ribose] polymerase;          Sh...    63   8e-09

 psg: 0.58  gvh: 0.23  alm: 0.54  top: 0.53  tms: 0.00  mit: 0.32  mip: 0.02
 nuc: 0.00  erl: 0.00  erm: 0.20  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 40.0 %: nuclear
	 32.0 %: cytoplasmic
	 20.0 %: mitochondrial
	  8.0 %: cytoskeletal

>> prediction for SHJ286 is nuc

>SHJ286F.Seq
AAAAAGAAAAATGGCAACAAAAAATACATCTCCTTATGAGATTGAATATGCAAAGAGTGA
TAGATCAACATGTTCAACCTGTCAAAGAGGTATTAATAAAGAAGCAGTTCGTATTGGTTA
TAAAACAAAATCAAAACACTTTGATGGAATGGATGTATCATGGCATCATTTAAAATGTAA
ATGTCCACAAGTACCATCATTTACAGATTTAATTCACTGGGAATACCTTCGTTGGGAAGA
CCAATTATCAATTAAAACAACTTATTTTTCATCTGAAAAGTATGATCCAAAATCAGCATC
AGAGGTACAAAGAGAGAAATATTTAAAGGCATTATGGGAAGTTAAAGATAGTATTGCCGA
TAACTTGAAGGGACCAGCAATTAAAAACATCATTCAATATAATAAAGGTTATGTTGATAA
GGCATCACCAGTTCATTTACTTCATACTCTCTCTGATTGGATGTTAAAAGGTCGTCCAGG
TAGATGTCCAACTTGTAAGAATTTCGATATACTTTTCAATGGTATCGAATATCAATGTAA
AGGTTGGATTTCAGGTTTCACAAAATGTGATTGGAAAGGTGATTCAATTGAAAGATGGGC
TGTTCAATTTCCTGATGATCTTTCANNNNNNNNNN