>SHJ258 (SHJ258Q) /CSM/SH/SHJ2-C/SHJ258Q.Seq.d/
GTAAAGTGTTGTTCAACTATTAACCCAACATTTATGATAAATAAATAAAAAAGGAGGGAA
AAAAAAATGAATGTAAAGGAAATGGATTTTAATGATTTATCAAATAAATCCAATCAAATA
ATCAATAGAATATCATCATTTTCAAGTCCAATTGGGTTATCATCATTCAACATTGAAAGA
AATCTACAAGAGATTGGTGATACATCAAAACAATTGAATGATTTAACTTCATCAAAAACT
CCATTTTCAAATCCATTGGAACCAAATGTATTTCAAGATTCTAAAATTAATAGAAAATAT
GGATTAGATCCAAAAGTTTTAGCAAAGAATTTATCTAATATCAATACATCATCATTCACA
GATGTTCAATCAGTACCAACAGATATTGATGGTTATTTAAAGGTTCAATTTGAGAATATC
ATTTTGAATACAATTTGTGACATTCAAAAAAAGACATCAAAAGAGTTTCAATCCCATTAT
GAACAAACATCAATTCATGATTGGAATAGAGATAAAAAATATTTAGAGGAGATTTTAGGT
CAAAAACATATTAAAGTTTTACCAAGTGTTGGTXXXXXXXXXX

vkccstinptfmink*KRREKKMNVKEMDFNDLSNKSNQIINRISSFSSPIGLSSFNIER
NLQEIGDTSKQLNDLTSSKTPFSNPLEPNVFQDSKINRKYGLDPKVLAKNLSNINTSSFT
DVQSVPTDIDGYLKVQFENIILNTICDIQKKTSKEFQSHYEQTSIHDWNRDKKYLEEILG
QKHIKVLPSV---

Frame A:
vkccstinptfmink*KRREKKMNVKEMDFNDLSNKSNQIINRISSFSSPIGLSSFNIER
NLQEIGDTSKQLNDLTSSKTPFSNPLEPNVFQDSKINRKYGLDPKVLAKNLSNINTSSFT
DVQSVPTDIDGYLKVQFENIILNTICDIQKKTSKEFQSHYEQTSIHDWNRDKKYLEEILG
QKHIKVLPSV---


Frame B:
*svvqlltqhl**inkkggkkk*m*rkwilmiyqinpik*sieyhhfqvqlgyhhstlke
iykrlvihqnn*mi*lhqklhfqihwnqmyfkilklienmd*iqkf*qriylisihhhsq
mfnqyqqilmvi*rfnlrisf*iqfvtfkkrhqksfnpimnkhqfmigieikni*rrf*v
knilkfyqvl---


Frame C:
kvlfny*pniydk*ikkegkkneckgngf**fik*iqsnnq*niiifksnwviiiqh*kk
strdw*yiktie*fnfiknsifksigtkcisrf*n**kiwirsksfskefi*yqyiiihr
csistnry*wlfkgsi*eyhfeynl*hskkdikrvsipl*tnins*le*r*kifrgdfrs
kty*sftkcw---

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

VHP160 (VHP160Q) /CSM/VH/VHP1-C/VHP160Q.Seq.d/                        961   0.0
VHO154 (VHO154Q) /CSM/VH/VHO1-C/VHO154Q.Seq.d/                        961   0.0
VHN194 (VHN194Q) /CSM/VH/VHN1-D/VHN194Q.Seq.d/                        961   0.0
VHI142 (VHI142Q) /CSM/VH/VHI1-B/VHI142Q.Seq.d/                        961   0.0
VHH243 (VHH243Q) /CSM/VH/VHH2-B/VHH243Q.Seq.d/                        961   0.0
VHG830 (VHG830Q) /CSM/VH/VHG8-B/VHG830Q.Seq.d/                        961   0.0
VHE366 (VHE366Q) /CSM/VH/VHE3-C/VHE366Q.Seq.d/                        961   0.0
VHC228 (VHC228Q) /CSM/VH/VHC2-B/VHC228Q.Seq.d/                        961   0.0
VFC542 (VFC542Q) /CSM/VF/VFC5-B/VFC542Q.Seq.d/                        961   0.0
VFB672 (VFB672Q) /CSM/VF/VFB6-C/VFB672Q.Seq.d/                        961   0.0

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

CV410734|CV410734.1 RC1-TN0152-200900-011-e05 TN0152 Homo sapiens cDNA, mRNA sequence.    48   0.23   1
AC178902|AC178902.1 Strongylocentrotus purpuratus clone R3-3114N15, WORKING DRAFT SEQUENCE, 23 unordered pieces.    36   0.24   6
BU548665|BU548665.1 GM880023A10B05 Gm-r1088 Glycine max cDNA clone Gm-r1088-8505 3', mRNA sequence.    44   0.38   2
AC158838|AC158838.1 Bos taurus clone CH240-297N14, WORKING DRAFT SEQUENCE, 32 unordered pieces.    46   0.91   1
AC151218|AC151218.2 Bos taurus clone CH240-317D22, WORKING DRAFT SEQUENCE, 31 unordered pieces.    46   0.91   1
CT437744|CT437744.1 Sus scrofa genomic clone CH242-325G16, genomic survey sequence.    46   0.91   1
AL096868|AL096868.15 Human DNA sequence *** SEQUENCING IN PROGRESS *** from clone  RP3-493D19.    46   0.91   1
CR847808|CR847808.6 Zebrafish DNA sequence from clone CH211-151I8 in linkage group 22.    34   1.7    6
AF141940|AF141940.1 Mycoplasma imitans VlhA1 precursor (vlhA1) and VlhA2 precursor (vlhA2) genes, partial cds.    36   1.7    3
AC117072|AC117072.3 Dictyostelium discoideum chromosome 2 map 3879572-4071762 strain AX4, complete sequence.    36   1.7    7

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(Q7ZX96) RecName: Full=Nuclear pore complex protein Nup93; AltNa...    47   4e-04
(A5PJZ5) RecName: Full=Nuclear pore complex protein Nup93; AltNa...    46   6e-04
D42085_1(D42085|pid:none) Homo sapiens KIAA0095 mRNA, partial cds.     46   6e-04
BC034346_1(BC034346|pid:none) Homo sapiens nucleoporin 93kDa, mR...    46   6e-04
(Q8BJ71) RecName: Full=Nuclear pore complex protein Nup93; AltNa...    46   6e-04
(Q66HC5) RecName: Full=Nuclear pore complex protein Nup93; AltNa...    46   6e-04
(Q5R822) RecName: Full=Nuclear pore complex protein Nup93; AltNa...    45   0.001
CR859933_1(CR859933|pid:none) Pongo abelii mRNA; cDNA DKFZp469K1...    45   0.001
CR859615_1(CR859615|pid:none) Pongo abelii mRNA; cDNA DKFZp468J0...    45   0.001
AK292262_1(AK292262|pid:none) Homo sapiens cDNA FLJ78686 complet...    44   0.002

 psg: 0.57  gvh: 0.44  alm: 0.49  top: 0.53  tms: 0.00  mit: 0.26  mip: 0.02
 nuc: 0.00  erl: 0.00  erm: 0.40  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 44.0 %: cytoplasmic
	 40.0 %: nuclear
	 12.0 %: mitochondrial
	  4.0 %: peroxisomal

>> prediction for SHJ258 is cyt

>SHJ258F.Seq
GTAAAGTGTTGTTCAACTATTAACCCAACATTTATGATAAATAAATAAAAAAGGAGGGAA
AAAAAAATGAATGTAAAGGAAATGGATTTTAATGATTTATCAAATAAATCCAATCAAATA
ATCAATAGAATATCATCATTTTCAAGTCCAATTGGGTTATCATCATTCAACATTGAAAGA
AATCTACAAGAGATTGGTGATACATCAAAACAATTGAATGATTTAACTTCATCAAAAACT
CCATTTTCAAATCCATTGGAACCAAATGTATTTCAAGATTCTAAAATTAATAGAAAATAT
GGATTAGATCCAAAAGTTTTAGCAAAGAATTTATCTAATATCAATACATCATCATTCACA
GATGTTCAATCAGTACCAACAGATATTGATGGTTATTTAAAGGTTCAATTTGAGAATATC
ATTTTGAATACAATTTGTGACATTCAAAAAAAGACATCAAAAGAGTTTCAATCCCATTAT
GAACAAACATCAATTCATGATTGGAATAGAGATAAAAAATATTTAGAGGAGATTTTAGGT
CAAAAACATATTAAAGTTTTACCAAGTGTTGGTNNNNNNNNNN