SHJ249
Library SH
(Link to library)
Clone ID SHJ249
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U15784-1
Original site URL
Representative seq. ID
(Link to Original site)
Representative DNA sequence
>SHJ249 (SHJ249Q) /CSM/SH/SHJ2-C/SHJ249Q.Seq.d/
ATATATAATAACTAGGCATCATCATCATTATAAATCAGTTGAGTTACAACAATAAGATAA
TAATAAAATCTTAATCATTTAAAAACTTTTATTTATTTATTTTAAATTATTTATTTATTT
TTTTATAATTGTTTTAATTGTGCAATAAATTTTTCAACATTGTTTTTAATTTCTATTTAT
TATTAATAAAAATATTATTTATTAACCAAATTAATAAAAAAAAAAAAAAAAANTAAAAAA
ANTAAAANTAAAANTAAAAAAANTAAAAAAAAAAXXXXXXXXXX
sequence update 2002.10.25
Translated Amino Acid sequence
i**lgiiiiinqlsynnkiiiks*sfknfylfilnylfifl*lf*LCNKFFNIVFNFYLL
LIKILFINQINKKKKKX*kx*x*x*kx*kk---


Translated Amino Acid sequence (All Frames)
Frame A:
iynn*asssl*is*vttir***nlnhlktfiylf*iiylffyncfncainfstlflisiy
y**kyylltklikkkkkxkkxkxkxkkxkkk---


Frame B:
yiitrhhhhyksvelqq*dnnkilii*kllfiyfklfiyffiivlivq*ifqhcf*flfi
inkniiy*pn**kkkkkxkkxkxkxkkxkk---


Frame C:
i**lgiiiiinqlsynnkiiiks*sfknfylfilnylfifl*lf*LCNKFFNIVFNFYLL
LIKILFINQINKKKKKX*kx*x*x*kx*kk---


Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

SHJ249 (SHJ249Q) /CSM/SH/SHJ2-C/SHJ249Q.Seq.d/ 170 7e-42
SHH201 (SHH201Q) /CSM/SH/SHH2-A/SHH201Q.Seq.d/ 170 7e-42
SHD389 (SHD389Q) /CSM/SH/SHD3-D/SHD389Q.Seq.d/ 170 7e-42
AHK431 (AHK431Q) /CSM/AH/AHK4-B/AHK431Q.Seq.d/ 170 7e-42
AHJ423 (AHJ423Q) /CSM/AH/AHJ4-A/AHJ423Q.Seq.d/ 170 7e-42
SHG182 (SHG182Q) /CSM/SH/SHG1-D/SHG182Q.Seq.d/ 167 1e-40
AHR491 (AHR491Q) /CSM/AH/AHR4-D/AHR491Q.Seq.d/ 163 2e-39
SHH368 (SHH368Q) /CSM/SH/SHH3-C/SHH368Q.Seq.d/ 121 6e-27
SHB731 (SHB731Q) /CSM/SH/SHB7-B/SHB731Q.Seq.d/ 121 6e-27
VSB361 (VSB361Q) /CSM/VS/VSB3-C/VSB361Q.Seq.d/ 38 0.069

own update 2003. 6. 8
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

AC116979|AC116979.3 Dictyostelium discoideum chromosome 2 map 6445720-6776760 strainAX4, complete sequence. 170 4e-65 2
AX348418|AX348418.1 Sequence 113 from Patent WO0202806. 50 2e-05 3
AX346374|AX346374.1 Sequence 1445 from Patent WO0200928. 50 2e-05 3
AX251183|AX251183.1 Sequence 151 from Patent WO0168912. 50 2e-05 3
BD452704|BD452704.1 Diagnosis of Diseases Associated with tumor suppressor genes and oncogenes. 50 2e-05 3
BD428939|BD428939.1 Method and nucleic acids for pharmacogenomic methylation analysis. 50 2e-05 3
AF275240|AF275240.1 Tamalia coweni 12S small subunit ribosomal RNA gene, partial sequence; tRNA-Val gene, complete sequence; and 16S large subunit ribosomal RNA gene, partial sequence; mitochondrial genes for mitochondrial products. 52 0.007 1
AC175443|AC175443.3 Bos taurus clone CH240-255H2, *** SEQUENCING IN PROGRESS ***, 46 unordered pieces. 48 0.007 2
AX252129|AX252129.1 Sequence 390 from Patent WO0168911. 36 0.011 4
BD460593|BD460593.1 Diagnosis of Diseases Associated with Cell Cycle. 36 0.011 4
dna update 2006. 5.10
Homology vs Protein

***** No hits found ******

Lambda K H
0.318 0.134 0.401

Gapped
Lambda K H
0.267 0.0410 0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3039690
Number of Hits to DB: 133,498,910
protein update 2009. 4.22
PSORT

psg: 0.89 gvh: 0.50 alm: 0.27 top: 0.80 tms: 0.07 mit: 0.40 mip: 0.00
nuc: 0.20 erl: 0.00 erm: 1.20 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 1.00 tyr: 0.19 leu: 0.19 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 1.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 0.00

28.0 %: cytoplasmic
24.0 %: mitochondrial
24.0 %: nuclear
8.0 %: plasma membrane
8.0 %: endoplasmic reticulum
4.0 %: vesicles of secretory system
4.0 %: peroxisomal

>> prediction for SHJ249 is cyt

5' end seq. ID SHJ249F
5' end seq.
>SHJ249F.Seq
ATATATAATAACTAGGCATCATCATCATTATAAATCAGTTGAGTTACAACAATAAGATAA
TAATAAAATCTTAATCATTTAAAAACTTTTATTTATTTATTTTAAATTATTTATTTATTT
TTTTATAATTGTTTTAATTGTGCAATAAATTTTTCAACATTGTTTTTAATTTCTATTTAT
TATTAATAAAAATATTATTTATTAACCAAATTAATAAAAAAAAAAAAAAAAANTAAAAAA
ANTAAAANTAAAANTAAAAAAANTAAAAAAAAAANNNNNNNNNN
Length of 5' end seq. 284
3' end seq. ID -
3' end seq. -
Length of 3' end seq. -
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -