>SHJ246 (SHJ246Q) /CSM/SH/SHJ2-B/SHJ246Q.Seq.d/
GTGTGATTGTGTTGTGTGTGTATTTTGGTTGATACACATTATATATATATATAATACAAT
AAAATGTCATTTTTTTTAGGACAGATTTTAGAAAAGATGGGTTCCATCGATAAAGATATT
AGATTCATGGCAACTCATGATCTTGCAAATGAATTAGAAAAAGATACTTTTAAAATGGAT
CCAACTTATGAAAATAAAATTGTTACAAAATTATTAGCATTAACAGCTGATTCAGCAAAT
AATGTTCAAGAAAATGTTGTTAAATGTTTAGGTTTATTAATTAAAAGAGTTAAAGATTCA
CAAGCAACAGAAATTATTGATACATTATCAAAAAATATTTTAGAAGAATCAAATAAAGAA
GAATTAGTTGAAATTTCAGGTATTGGTTTAAAAACAATCATTACAAATTTACCAAGTGAA
GGTAGTTCAATTTCAACTTTAGTAATTAAAAATTTAGTACCAAAATTATTAATTGGTATT
GATAGTGAAAAATTAAAAGATAAAAATGAAATTAAAATGTCATGTTTAGATATTTTAAAT
GATTTATTACAAAAGTATGGATCATTTATGATTGGAGATTTAGAXXXXXXXXXX

v*lccvcilvdthyiyi*YNKMSFFLGQILEKMGSIDKDIRFMATHDLANELEKDTFKMD
PTYENKIVTKLLALTADSANNVQENVVKCLGLLIKRVKDSQATEIIDTLSKNILEESNKE
ELVEISGIGLKTIITNLPSEGSSISTLVIKNLVPKLLIGIDSEKLKDKNEIKMSCLDILN
DLLQKYGSFMIGDL---

Frame A:
v*lccvcilvdthyiyi*YNKMSFFLGQILEKMGSIDKDIRFMATHDLANELEKDTFKMD
PTYENKIVTKLLALTADSANNVQENVVKCLGLLIKRVKDSQATEIIDTLSKNILEESNKE
ELVEISGIGLKTIITNLPSEGSSISTLVIKNLVPKLLIGIDSEKLKDKNEIKMSCLDILN
DLLQKYGSFMIGDL---


Frame B:
cdcvvcvfwlihiiyiyntikchff*drf*krwvpsikildswqlmilqmn*kkillkwi
qlmkikllqny*h*qliqqimfkkmllnv*vy*lkelkihkqqkllihyqkif*knqikk
n*lkfqvlv*kqslqiyqvkvvqfql**lki*yqny*lvlivkn*kikmklkchv*if*m
iyyksmdhl*lei*---


Frame C:
vivlcvyfg*ytlyiyiiq*nviffrtdfrkdgfhr*ry*ihgns*sck*irkryf*ngs
nl*k*ncykiisins*fsk*csrkcc*mfrfin*ks*rftsnrny*yiikkyfrrik*rr
is*nfrywfknnhykftk*r*fnfnfsn*kfstkiinwy***kikr*k*n*nvmfryfk*
fitkvwiiydwrf---

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

VHP493 (VHP493Q) /CSM/VH/VHP4-D/VHP493Q.Seq.d/                        759   0.0
VHO482 (VHO482Q) /CSM/VH/VHO4-D/VHO482Q.Seq.d/                        759   0.0
VHH480 (VHH480Q) /CSM/VH/VHH4-D/VHH480Q.Seq.d/                        759   0.0
VHE607 (VHE607Q) /CSM/VH/VHE6-A/VHE607Q.Seq.d/                        759   0.0
VHD369 (VHD369Q) /CSM/VH/VHD3-C/VHD369Q.Seq.d/                        759   0.0
VHB750 (VHB750Q) /CSM/VH/VHB7-C/VHB750Q.Seq.d/                        759   0.0
SHL726 (SHL726Q) /CSM/SH/SHL7-B/SHL726Q.Seq.d/                        759   0.0
SHK714 (SHK714Q) /CSM/SH/SHK7-A/SHK714Q.Seq.d/                        759   0.0
SHK667 (SHK667Q) /CSM/SH/SHK6-C/SHK667Q.Seq.d/                        759   0.0
SHK408 (SHK408Q) /CSM/SH/SHK4-A/SHK408Q.Seq.d/                        759   0.0

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

AC116956|AC116956.2 Dictyostelium discoideum chromosome 2 map 1418423-1684967 strainAX4, complete sequence.   387   0.0    5
BD061520|BD061520.1 Genome DNA of symbiotic bacteria of aphid.     36   6e-04  14
AR409405|AR409405.1 Sequence 1 from patent US 6632935.             36   6e-04  14
BA000003|BA000003.2 Buchnera aphidicola str. APS (Acyrthosiphon pisum) genomic DNA, complete sequence.    36   6e-04  14
CC114176|CC114176.1 NDL.57K9.SP6 Notre Dame Liverpool Aedes aegypti genomic clone NDL.57K9, DNA sequence.    40   8e-04  3
BX842642|BX842642.1 Mycoplasma mycoides subsp. mycoides SC genomic DNA, complete  sequence; segment 1/4.    34   0.021  8
AC166479|AC166479.2 Bos taurus clone CH240-177C13, *** SEQUENCING IN PROGRESS ***, 20 unordered pieces.    44   0.048  4
BB976652|BB976652.1 Plasmodium berghei strain ANKA cDNA clone:OK006559, ookinete 5' EST.    46   0.091  2
AE009951|AE009951.2 Fusobacterium nucleatum subsp. nucleatum ATCC 25586, complete genome.    34   0.096  18
AZ524742|AZ524742.1 235PbG09 Pb MBN #21 Plasmodium berghei genomic 3', DNA sequence.    46   0.11   2

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(Q86KD1) RecName: Full=Cullin-associated NEDD8-dissociated prote...   332   3e-90
AE014134_1928(AE014134|pid:none) Drosophila melanogaster chromos...   131   2e-29
BT023510_1(BT023510|pid:none) Drosophila melanogaster LD09533 fu...   131   2e-29
BC155643_1(BC155643|pid:none) Danio rerio si:dkey-72g22.1, mRNA ...   129   6e-29
BC071146_1(BC071146|pid:none) Xenopus laevis MGC83065 protein, m...   128   1e-28
(Q6ZQ38) RecName: Full=Cullin-associated NEDD8-dissociated prote...   128   1e-28
AK144869_1(AK144869|pid:none) Mus musculus lung RCB-0558 LLC cDN...   128   1e-28
AK129225_1(AK129225|pid:none) Mus musculus mRNA for mKIAA0829 pr...   128   1e-28
AB020636_1(AB020636|pid:none) Homo sapiens mRNA for KIAA0829 pro...   128   1e-28
AK292456_1(AK292456|pid:none) Homo sapiens cDNA FLJ77762 complet...   128   1e-28

 psg: 0.90  gvh: 0.44  alm: 0.36  top: 0.40  tms: 0.00  mit: 0.16  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 48.0 %: cytoplasmic
	 32.0 %: nuclear
	 12.0 %: vesicles of secretory system
	  8.0 %: endoplasmic reticulum

>> prediction for SHJ246 is cyt

>SHJ246F.Seq
GTGTGATTGTGTTGTGTGTGTATTTTGGTTGATACACATTATATATATATATAATACAAT
AAAATGTCATTTTTTTTAGGACAGATTTTAGAAAAGATGGGTTCCATCGATAAAGATATT
AGATTCATGGCAACTCATGATCTTGCAAATGAATTAGAAAAAGATACTTTTAAAATGGAT
CCAACTTATGAAAATAAAATTGTTACAAAATTATTAGCATTAACAGCTGATTCAGCAAAT
AATGTTCAAGAAAATGTTGTTAAATGTTTAGGTTTATTAATTAAAAGAGTTAAAGATTCA
CAAGCAACAGAAATTATTGATACATTATCAAAAAATATTTTAGAAGAATCAAATAAAGAA
GAATTAGTTGAAATTTCAGGTATTGGTTTAAAAACAATCATTACAAATTTACCAAGTGAA
GGTAGTTCAATTTCAACTTTAGTAATTAAAAATTTAGTACCAAAATTATTAATTGGTATT
GATAGTGAAAAATTAAAAGATAAAAATGAAATTAAAATGTCATGTTTAGATATTTTAAAT
GATTTATTACAAAAGTATGGATCATTTATGATTGGAGATTTAGANNNNNNNNNN