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Dicty_cDB
Contig List | Clone List | cDNA Library List
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
SHJ245
Library SH
(Link to library)
Clone ID SHJ245
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig -
Original site URL
Representative seq. ID
(Link to Original site)
Representative DNA sequence 
>SHJ245 (SHJ245Q) /CSM/SH/SHJ2-B/SHJ245Q.Seq.d/
ATTTTTAAATATATATATTAATATATATTAATATATTAATATTAATAAAATGAAAATATT
ATATTCATTATTATTAATATCAAGTATAATTTTAAATACTGTATTAAATATTTCATCACA
AGTATATGATCAACGTATTTTGGCATTAAAAGGAAAATGTTATTTAGATTCAAATAAAAA
TGCATTGTATGATGAAGGTGAACCAGGATTTGGAAATGTTGAAATTTCTTTAGGAAATGC
AACTGATTATAAGGGAAATAAATATCCAATACGTTATTCATCTGCTGATGGTACATTTAT
ATATGATGGATTAACTCAACGTACAACTTATGAATTTACATTTACCAATCCAAAAGATTA
TTACTTTGAAACCTATGAAAAGACATTGGCTTGTCCACCAGGTGTACCATGTATTCGTCC
AACGGTTTCAGCTGATAATTTGGCAGCAGATCTTTTAGTTGCAAATACCTTTGCCTATAA
CATTCCATTGATTAAACAAGTTGGTGTTTCATCAGGCTCATCTATACTTACAGTTAGAAT
TAGTGTTGATTTGGGTTATGTTGAGCAAACTCAACCACCAACTCAACCACCTACTCAACC
ACCTACTCAACCACCAACACCTCCACCATTTACTGGTAGTGCCGTCGCTGGTTTATTATT
TACCGATATCAATGGTAATGGAATTTTTGATGGAAGXXXXXXXXXX
sequence update 2002.10.25
Translated Amino Acid sequence 
flniyiniy*YININKMKILYSLLLISSIILNTVLNISSQVYDQRILALKGKCYLDSNKN
ALYDEGEPGFGNVEISLGNATDYKGNKYPIRYSSADGTFIYDGLTQRTTYEFTFTNPKDY
YFETYEKTLACPPGVPCIRPTVSADNLAADLLVANTFAYNIPLIKQVGVSSGSSILTVRI
SVDLGYVEQTQPPTQPPTQPPTQPPTPPPFTGSAVAGLLFTDINGNGIFDG---
Translated Amino Acid sequence (All Frames) 
Frame A:
ifkyiy*yiliy*y**neniifiiinikynfkycikyfitsi*styfgikrkmlfrfk*k
civ**r*triwkc*nffrkcn*l*gk*isntlfic*wyiyi*winstynl*iyiyqskrl
ll*nl*kdiglstrctmyssngfs**fgsrsfsckylcl*hsid*tswcfirliytys*n
*c*fglc*ansttnsttysttysttntstiyw*crrwfiiyryqw*wnf*w---


Frame B:
flniyiniy*YININKMKILYSLLLISSIILNTVLNISSQVYDQRILALKGKCYLDSNKN
ALYDEGEPGFGNVEISLGNATDYKGNKYPIRYSSADGTFIYDGLTQRTTYEFTFTNPKDY
YFETYEKTLACPPGVPCIRPTVSADNLAADLLVANTFAYNIPLIKQVGVSSGSSILTVRI
SVDLGYVEQTQPPTQPPTQPPTQPPTPPPFTGSAVAGLLFTDINGNGIFDG---


Frame C:
f*iyiliyinililik*kyyihyy*yqv*f*ily*ifhhkyminvfwh*kenvi*iqikm
hcmmkvnqdlemlkfl*emqliireiniqyvihllmvhlymmd*lnvqlmnlhlpiqkii
tlkpmkrhwlvhqvyhvfvqrfqliiwqqif*lqiplpitfh*lnklvfhqahlylqlel
vliwvmlsklnhqlnhllnhllnhqhlhhllvvpslvyylpismvmeflme---
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SHJ874 (SHJ874Q) /CSM/SH/SHJ8-D/SHJ874Q.Seq.d/                        954   0.0
SHL883 (SHL883Q) /CSM/SH/SHL8-D/SHL883Q.Seq.d/                        954   0.0
SHL845 (SHL845Q) /CSM/SH/SHL8-B/SHL845Q.Seq.d/                        954   0.0
SHL837 (SHL837Q) /CSM/SH/SHL8-B/SHL837Q.Seq.d/                        954   0.0
SHL807 (SHL807Q) /CSM/SH/SHL8-A/SHL807Q.Seq.d/                        954   0.0
SHL805 (SHL805Q) /CSM/SH/SHL8-A/SHL805Q.Seq.d/                        954   0.0
SHL764 (SHL764Q) /CSM/SH/SHL7-C/SHL764Q.Seq.d/                        954   0.0
SHL741 (SHL741Q) /CSM/SH/SHL7-B/SHL741Q.Seq.d/                        954   0.0
SHL696 (SHL696Q) /CSM/SH/SHL6-D/SHL696Q.Seq.d/                        954   0.0
own update 2009. 4. 4
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

AC129388|AC129388.3 Rattus norvegicus clone CH230-9G8, *** SEQUENCING IN PROGRESS ***, 2 unordered pieces.    38   0.54   8
AC005213|AC005213.1 Homo sapiens chromosome 5, BAC clone 84E9 (LBNL H120), complete sequence.    46   1.1    1
AC005188|AC005188.1 Homo sapiens PAC clone RP1-17P5 from 5q31, complete sequence.    46   1.1    1
AC183254|AC183254.1 Bos taurus clone CH240-97D22, *** SEQUENCING IN PROGRESS ***, 15 unordered pieces.    36   2.2    4
BI742812|BI742812.1 kx35c12.y1 Parastrongyloides trichosuri IL pAMP1 v1 Chiapelli McCarter Parastrongyloides trichosuri cDNA 5', mRNA sequence.    44   4.4    1
AV954562|AV954562.1 Ciona intestinalis cDNA, clone:cicl07i13, 5' end, single read.    44   4.4    1
AV984767|AV984767.1 Ciona intestinalis cDNA, clone:cilv38i14, 5' end, single read.    44   4.4    1
AC168133|AC168133.2 Bos taurus clone CH240-229B22, *** SEQUENCING IN PROGRESS ***, 44 unordered pieces.    44   4.4    1
AC165704|AC165704.1 Bos taurus clone CH240-166D6, *** SEQUENCING IN PROGRESS ***, 22 unordered pieces.    44   4.4    1
AC140750|AC140750.3 Rattus norvegicus clone CH230-252G3, *** SEQUENCING IN PROGRESS ***, 39 unordered pieces.    44   4.4    1
dna update 2006. 5.10
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CP000284_2387(CP000284|pid:none) Methylobacillus flagellatus KT,...    49   1e-04
CP000686_1034(CP000686|pid:none) Roseiflexus sp. RS-1, complete ...    45   0.003
CP001337_286(CP001337|pid:none) Chloroflexus aggregans DSM 9485,...    42   0.023
BX294149_114(BX294149|pid:none) Rhodopirellula baltica SH 1 comp...    40   0.051
CP000830_3576(CP000830|pid:none) Dinoroseobacter shibae DFL 12, ...    39   0.15
CP000909_404(CP000909|pid:none) Chloroflexus aurantiacus J-10-fl...    38   0.33
CP000804_904(CP000804|pid:none) Roseiflexus castenholzii DSM 139...    37   0.73
CP000909_3116(CP000909|pid:none) Chloroflexus aurantiacus J-10-f...    36   0.96
CP001337_3037(CP001337|pid:none) Chloroflexus aggregans DSM 9485...    36   0.96
AM263198_431(AM263198|pid:none) Listeria welshimeri serovar 6b s...    35   1.6
protein update 2009. 4.22
PSORT 

 psg: 0.95  gvh: 0.59  alm: 0.26  top: 0.40  tms: 0.07  mit: 0.31  mip: 0.07
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 1.00  tyr: 0.56  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 1.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 0.00 

	 24.0 %: endoplasmic reticulum
	 20.0 %: cytoplasmic
	 16.0 %: Golgi
	 16.0 %: mitochondrial
	 12.0 %: nuclear
	  4.0 %: plasma membrane
	  4.0 %: vesicles of secretory system
	  4.0 %: extracellular, including cell wall

>> prediction for SHJ245 is end
5' end seq. ID SHJ245F
5' end seq. 
>SHJ245F.Seq
ATTTTTAAATATATATATTAATATATATTAATATATTAATATTAATAAAATGAAAATATT
ATATTCATTATTATTAATATCAAGTATAATTTTAAATACTGTATTAAATATTTCATCACA
AGTATATGATCAACGTATTTTGGCATTAAAAGGAAAATGTTATTTAGATTCAAATAAAAA
TGCATTGTATGATGAAGGTGAACCAGGATTTGGAAATGTTGAAATTTCTTTAGGAAATGC
AACTGATTATAAGGGAAATAAATATCCAATACGTTATTCATCTGCTGATGGTACATTTAT
ATATGATGGATTAACTCAACGTACAACTTATGAATTTACATTTACCAATCCAAAAGATTA
TTACTTTGAAACCTATGAAAAGACATTGGCTTGTCCACCAGGTGTACCATGTATTCGTCC
AACGGTTTCAGCTGATAATTTGGCAGCAGATCTTTTAGTTGCAAATACCTTTGCCTATAA
CATTCCATTGATTAAACAAGTTGGTGTTTCATCAGGCTCATCTATACTTACAGTTAGAAT
TAGTGTTGATTTGGGTTATGTTGAGCAAACTCAACCACCAACTCAACCACCTACTCAACC
ACCTACTCAACCACCAACACCTCCACCATTTACTGGTAGTGCCGTCGCTGGTTTATTATT
TACCGATATCAATGGTAATGGAATTTTTGATGGAAGNNNNNNNNNN
Length of 5' end seq. 706
3' end seq. ID -
3' end seq. -
Length of 3' end seq. -
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -