>SHJ223 (SHJ223Q) /CSM/SH/SHJ2-A/SHJ223Q.Seq.d/
GATTTTATTTTTGTTCTTTATATCAGGATATTCAATGAATCCTCCAACACCAATAGATGC
AATATATGATGATAAATCATTTACATTAATTTTTAATAGTAATCTCCCATATTCTACCCG
TTTAATTTTGTATAAAAACGAAAAAGAACCCAGAACTGAAATGGCACCAAATTATTTCAA
TTGTTCTCTAGTTGATGGAGAGAGACATTGTTTATTCCATTCAGATGAACCATTCTCAAG
ATTATGGGGTAGTATAGACAGTAAGGTATGTGTTAGAGATAAATCAAATACTGTTGAGGA
TTGTACATTTGATGCTTCGGGTTTAGTATATTATCCAAAAGTATACAATTTGAAATATAG
TAAAAAACCAAAAACATCTGGTGAAGATATAGTCATTACTGGCTCATATTTAAGATTATT
TGGTGGTCCTAATTTCCTTATTAATTCCATTGATGTAAATAAACCTTTTGTTGTTAAAGG
TAATTTCTCTGATCCATCTTTTGACTGTAATAATATTACTGTAACATTTCCACCAGGATC
CGGAAAATTTAGGTTGTACTATGATGAAACTGGGGATAATCCTGTACCATTTTCATACGA
ATCGCCTATAATATCAAGCTCTGTCTCAGACTCATCAAAACAAATAATAACAATTAATGG
TGATAACTTCTTTACAXXXXXXXXXX

ILFLFFISGYSMNPPTPIDAIYDDKSFTLIFNSNLPYSTRLILYKNEKEPRTEMAPNYFN
CSLVDGERHCLFHSDEPFSRLWGSIDSKVCVRDKSNTVEDCTFDASGLVYYPKVYNLKYS
KKPKTSGEDIVITGSYLRLFGGPNFLINSIDVNKPFVVKGNFSDPSFDCNNITVTFPPGS
GKFRLYYDETGDNPVPFSYESPIISSSVSDSSKQIITINGDNFF---

Frame A:
dfifvlyirifnessntnrcni***iiyinf***spifypfnfv*krkrtqn*ngtklfq
lfss*wretlfipfr*tilkimg*yrq*gmc*r*ikyc*glyi*cfgfsilsksiqfei*
*ktkniw*ryshywlifkiiwws*fpy*fh*ck*tfcc*r*fl*sif*l**yycnistri
rki*vvl**nwg*sctifiriayniklclrliktnnnn*w**lly---


Frame B:
ILFLFFISGYSMNPPTPIDAIYDDKSFTLIFNSNLPYSTRLILYKNEKEPRTEMAPNYFN
CSLVDGERHCLFHSDEPFSRLWGSIDSKVCVRDKSNTVEDCTFDASGLVYYPKVYNLKYS
KKPKTSGEDIVITGSYLRLFGGPNFLINSIDVNKPFVVKGNFSDPSFDCNNITVTFPPGS
GKFRLYYDETGDNPVPFSYESPIISSSVSDSSKQIITINGDNFF---


Frame C:
fyfcslyqdiq*ilqhq*mqymminhlh*flivishilpv*fciktkknpelkwhqiisi
vl*lmerdivysiqmnhsqdygvv*tvryvleinqillrivhlmlrv*yiiqkyti*niv
knqkhlvki*sllahi*dylvvlislliplm*inllllkvislihlltviill*hfhqdp
enlgctmmklgiilyhfhtnrl*yqalsqthqnk**qlmvitsl---

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SHK756 (SHK756Q) /CSM/SH/SHK7-C/SHK756Q.Seq.d/                        716   0.0
SHK652 (SHK652Q) /CSM/SH/SHK6-C/SHK652Q.Seq.d/                        716   0.0
SHK617 (SHK617Q) /CSM/SH/SHK6-A/SHK617Q.Seq.d/                        716   0.0
SHK103 (SHK103Q) /CSM/SH/SHK1-A/SHK103Q.Seq.d/                        716   0.0
SHJ608 (SHJ608Q) /CSM/SH/SHJ6-A/SHJ608Q.Seq.d/                        716   0.0
SHJ223 (SHJ223Q) /CSM/SH/SHJ2-A/SHJ223Q.Seq.d/                        716   0.0
SHH790 (SHH790Q) /CSM/SH/SHH7-D/SHH790Q.Seq.d/                        716   0.0
SHH115 (SHH115Q) /CSM/SH/SHH1-A/SHH115Q.Seq.d/                        716   0.0
SHG657 (SHG657Q) /CSM/SH/SHG6-C/SHG657Q.Seq.d/                        716   0.0
SHG145 (SHG145Q) /CSM/SH/SHG1-B/SHG145Q.Seq.d/                        716   0.0

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

U09478|U09478.1 Dictyostelium discoideum KAx-3 LagC protein (lagC) mRNA, complete cds.   716   0.0    2
AF258615|AF258615.1 Dictyostelium discoideum LagC protein (lagC) gene, complete cds.   611   0.0    2
AC116982|AC116982.2 Dictyostelium discoideum chromosome 2 map 3622643-3879522 strain AX4, complete sequence.    82   2e-22  6
AB032076|AB032076.1 Dictyostelium discoideum mRNA for lagC2, complete cds.    58   7e-14  4
AC094308|AC094308.10 Rattus norvegicus clone CH230-3G2, *** SEQUENCING IN PROGRESS ***, 2 unordered pieces.    50   0.069  1
CT025578|CT025578.5 Zebrafish DNA sequence *** SEQUENCING IN PROGRESS *** from clone.    36   0.16   2
CT573049|CT573049.1 Zebrafish DNA sequence *** SEQUENCING IN PROGRESS *** from clone CH211-18H22.    36   0.16   2
BX255889|BX255889.7 Zebrafish DNA sequence from clone CH211-270O7 in linkage group 17.    36   0.16   2
AC155269|AC155269.2 Mus musculus BAC clone RP23-215E17 from 12, complete sequence.    48   0.27   1
AC116587|AC116587.4 Mus musculus chromosome 12 clone RP23-409C18, complete sequence.    48   0.27   1

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

A54280(A54280) cell differentiation protein LagC precursor - sli...   429   e-119
FJ374933_1(FJ374933|pid:none) Dictyostelium discoideum strain QS...   380   e-104
FJ374923_1(FJ374923|pid:none) Dictyostelium discoideum strain QS...   380   e-104
FJ374927_1(FJ374927|pid:none) Dictyostelium discoideum strain QS...   377   e-103
FJ374925_1(FJ374925|pid:none) Dictyostelium discoideum strain QS...   377   e-103
FJ374948_1(FJ374948|pid:none) Dictyostelium discoideum strain QS...   372   e-102
FJ374943_1(FJ374943|pid:none) Dictyostelium discoideum strain QS...   368   e-101
FJ374945_1(FJ374945|pid:none) Dictyostelium discoideum strain QS...   368   e-101
FJ374944_1(FJ374944|pid:none) Dictyostelium discoideum strain QS...   368   e-101
FJ374949_1(FJ374949|pid:none) Dictyostelium discoideum strain QS...   368   e-101

 psg: 1.00  gvh: 0.38  alm: 0.45  top: 0.33  tms: 0.00  mit: 0.25  mip: 0.00
 nuc: 0.03  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 52.0 %: cytoplasmic
	 36.0 %: nuclear
	  4.0 %: vacuolar
	  4.0 %: vesicles of secretory system
	  4.0 %: endoplasmic reticulum

>> prediction for SHJ223 is cyt

>SHJ223F.Seq
GATTTTATTTTTGTTCTTTATATCAGGATATTCAATGAATCCTCCAACACCAATAGATGC
AATATATGATGATAAATCATTTACATTAATTTTTAATAGTAATCTCCCATATTCTACCCG
TTTAATTTTGTATAAAAACGAAAAAGAACCCAGAACTGAAATGGCACCAAATTATTTCAA
TTGTTCTCTAGTTGATGGAGAGAGACATTGTTTATTCCATTCAGATGAACCATTCTCAAG
ATTATGGGGTAGTATAGACAGTAAGGTATGTGTTAGAGATAAATCAAATACTGTTGAGGA
TTGTACATTTGATGCTTCGGGTTTAGTATATTATCCAAAAGTATACAATTTGAAATATAG
TAAAAAACCAAAAACATCTGGTGAAGATATAGTCATTACTGGCTCATATTTAAGATTATT
TGGTGGTCCTAATTTCCTTATTAATTCCATTGATGTAAATAAACCTTTTGTTGTTAAAGG
TAATTTCTCTGATCCATCTTTTGACTGTAATAATATTACTGTAACATTTCCACCAGGATC
CGGAAAATTTAGGTTGTACTATGATGAAACTGGGGATAATCCTGTACCATTTTCATACGA
ATCGCCTATAATATCAAGCTCTGTCTCAGACTCATCAAAACAAATAATAACAATTAATGG
TGATAACTTCTTTACANNNNNNNNNN