>SHJ212 (SHJ212Q) /CSM/SH/SHJ2-A/SHJ212Q.Seq.d/
ATTCAGCCGTCGCCAGTGAATTCCTTCGTGGTGATTTACGTATTAATCTTTACAAGATTT
TGGATGATAATAGAAAATCTCAAATGCTTTTCATTCAAGGTAATCATGATTACAACTACA
ATTGGATTCAAGAAACTTTAGAAGCTGGTTCTTACATGGCCAAGATTGAACGTCCACAAT
TTAACATTGGTTCTGGTCAACCAACTTGTATTCCATTCGAATTTGAATTCTCCCTCCACC
CACTCTCTGCCGTACCAAAATGTCCAGGTGAATCAATTCCACTTAGTTGGAATACCATTC
GTTTCTTGGGTACTGAAGGTAAAATGCATTATCAATCCGATAATTTCGTCGTACCACAAG
GTAAATATACTCATGTTGAAATTCCACTTCAAACTGTAAACGATTCTATCATTCGTATCT
ATGTCAATCCACATATTGTCGATATCGATATTCGTTTGAAAGATCCATTCACAAATCAAA
CCTTAATTAGTGGTTCAAACCTTATCAACACTGAAGAATCATTTGTCTATCAACTTAGTG
CTGGTTCTGTATATTATCTCCAACTTCAATTCTGGAAATGGTCAAATAATATTCCATTAT
GTAATGTTTCCAGXXXXXXXXXX

SAVASEFLRGDLRINLYKILDDNRKSQMLFIQGNHDYNYNWIQETLEAGSYMAKIERPQF
NIGSGQPTCIPFEFEFSLHPLSAVPKCPGESIPLSWNTIRFLGTEGKMHYQSDNFVVPQG
KYTHVEIPLQTVNDSIIRIYVNPHIVDIDIRLKDPFTNQTLISGSNLINTEESFVYQLSA
GSVYYLQLQFWKWSNNIPLCNVS---

Frame A:
iqpspvnsfvviyvliftrfwmiienlkcfsfkvimitttigfkkl*klvltwprlnvhn
ltlvlvnqlvfhsnlnspsthslpyqnvqvnqfhlvgipfvswvlkvkciinpiissyhk
vnilmlkfhfkl*tilsfvsmsihilsisifv*kihsqikp*lvvqtlstlknhlsinlv
lvlyiisnfnsgngqiifhyvmfp---


Frame B:
fsrrq*ipsw*fty*slqdfg***kisnafhsr*s*lqlqldsrnfrswflhgqd*tsti
*hwfwstnlysiri*ilppptlcrtkmsr*inst*leyhsflgy*r*nalsir*frrttr
*iysc*nstsnckrfyhsylcqstycryrysfersihksnln*wfkpyqh*riiclst*c
wfcilsptsilemvk*ysim*cf---


Frame C:
SAVASEFLRGDLRINLYKILDDNRKSQMLFIQGNHDYNYNWIQETLEAGSYMAKIERPQF
NIGSGQPTCIPFEFEFSLHPLSAVPKCPGESIPLSWNTIRFLGTEGKMHYQSDNFVVPQG
KYTHVEIPLQTVNDSIIRIYVNPHIVDIDIRLKDPFTNQTLISGSNLINTEESFVYQLSA
GSVYYLQLQFWKWSNNIPLCNVS---

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SHJ212 (SHJ212Q) /CSM/SH/SHJ2-A/SHJ212Q.Seq.d/                       1215   0.0
SHB717 (SHB717Q) /CSM/SH/SHB7-A/SHB717Q.Seq.d/                       1055   0.0
SFG585 (SFG585Q) /CSM/SF/SFG5-D/SFG585Q.Seq.d/                        977   0.0
VHO182 (VHO182Q) /CSM/VH/VHO1-D/VHO182Q.Seq.d/                        708   0.0
AHQ360 (AHQ360Q) /CSM/AH/AHQ3-C/AHQ360Q.Seq.d/                        702   0.0
AHI891 (AHI891Q) /CSM/AH/AHI8-D/AHI891Q.Seq.d/                        488   e-137
SHA574 (SHA574Q) /CSM/SH/SHA5-D/SHA574Q.Seq.d/                        240   2e-62
AHC389 (AHC389Q) /CSM/AH/AHC3-D/AHC389Q.Seq.d/                        186   3e-46
SHH319 (SHH319Q) /CSM/SH/SHH3-A/SHH319Q.Seq.d/                        141   1e-32
AHO404 (AHO404Q) /CSM/AH/AHO4-A/AHO404Q.Seq.d/                         90   5e-17

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

AC164465|AC164465.1 Bos taurus clone CH240-153B20, *** SEQUENCING IN PROGRESS ***, 28 unordered pieces.    50   0.062  1
AC152487|AC152487.3 Dasypus novemcinctus clone VMRC5-546B21, WORKING DRAFT SEQUENCE, 8 ordered pieces.    50   0.062  1
AC005887|AC005887.3 citb_173_i_12, complete sequence.              46   0.16   3
AC182291|AC182291.2 Bos taurus clone CH240-488C10, *** SEQUENCING IN PROGRESS ***, 22 unordered pieces.    48   0.25   1
AC166418|AC166418.2 Bos taurus clone CH240-184A24, *** SEQUENCING IN PROGRESS ***, 19 unordered pieces.    48   0.25   1
AC156906|AC156906.2 Bos taurus clone CH240-59N24, *** SEQUENCING IN PROGRESS ***, 23 unordered pieces.    48   0.25   1
AC076974|AC076974.33 Mus musculus chromosome 8 clone rp23-267j18 strain C57BL/6J, complete sequence.    48   0.25   1
DA244109|DA244109.1 Homo sapiens cDNA clone BRAWH3042501, 5' end, mRNA sequence.    46   0.97   1
CN334862|CN334862.1 17000600169308 GRN_PREHEP Homo sapiens cDNA 5', mRNA sequence.    46   0.97   1
AP007959|AP007959.1 Lotus corniculatus var. japonicus genomic DNA, chromosome 2, clone:LjT24P12, TM1285.    46   0.97   1

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM270259_9(AM270259|pid:none) Aspergillus niger contig An12c0020...    35   1.6
CS544737_1(CS544737|pid:none) Sequence 3 from Patent WO2006044912.     35   1.6
CP000061_248(CP000061|pid:none) Aster yellows witches'-broom phy...    34   3.7
AY754825_1(AY754825|pid:none) Human rotavirus C isolate DhakaC13...    33   4.8
CP000728_378(CP000728|pid:none) Clostridium botulinum F str. Lan...    33   4.8
AP007169_508(AP007169|pid:none) Aspergillus oryzae RIB40 genomic...    33   4.8
BA000032_357(BA000032|pid:none) Vibrio parahaemolyticus RIMD 221...    33   8.2
CP000053_1104(CP000053|pid:none) Rickettsia felis URRWXCal2, com...    33   8.2
FJ619589_1(FJ619589|pid:none) Human rotavirus C strain 9298 VP4 ...    33   8.2
AM412317_378(AM412317|pid:none) Clostridium botulinum A str. ATC...    33   8.2

 psg: 0.75  gvh: 0.15  alm: 0.48  top: 0.53  tms: 0.00  mit: 0.24  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 44.0 %: nuclear
	 28.0 %: cytoplasmic
	 12.0 %: mitochondrial
	  8.0 %: cytoskeletal
	  4.0 %: vacuolar
	  4.0 %: Golgi

>> prediction for SHJ212 is nuc

>SHJ212F.Seq
ATTCAGCCGTCGCCAGTGAATTCCTTCGTGGTGATTTACGTATTAATCTTTACAAGATTT
TGGATGATAATAGAAAATCTCAAATGCTTTTCATTCAAGGTAATCATGATTACAACTACA
ATTGGATTCAAGAAACTTTAGAAGCTGGTTCTTACATGGCCAAGATTGAACGTCCACAAT
TTAACATTGGTTCTGGTCAACCAACTTGTATTCCATTCGAATTTGAATTCTCCCTCCACC
CACTCTCTGCCGTACCAAAATGTCCAGGTGAATCAATTCCACTTAGTTGGAATACCATTC
GTTTCTTGGGTACTGAAGGTAAAATGCATTATCAATCCGATAATTTCGTCGTACCACAAG
GTAAATATACTCATGTTGAAATTCCACTTCAAACTGTAAACGATTCTATCATTCGTATCT
ATGTCAATCCACATATTGTCGATATCGATATTCGTTTGAAAGATCCATTCACAAATCAAA
CCTTAATTAGTGGTTCAAACCTTATCAACACTGAAGAATCATTTGTCTATCAACTTAGTG
CTGGTTCTGTATATTATCTCCAACTTCAATTCTGGAAATGGTCAAATAATATTCCATTAT
GTAATGTTTCCAGNNNNNNNNNN