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Dicty_cDB
Contig List | Clone List | cDNA Library List
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
AFJ603
Library AF
(Link to library)
Clone ID AFJ603
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U10989-1
Original site URL
Representative seq. ID AFJ603P
(Link to Original site)
Representative DNA sequence 
>AFJ603 (AFJ603Q) /CSM/AF/AFJ6-A/AFJ603Q.Seq.d/
AATTATCAGTAGGATCAATATCAATTAAAAGTAATATTGAATCAACAATATTAAGTATTT
CAATTTCAAGATATCAGAGTTTATTTTTCCCATTTGTTTCAAATAATGTTTTAAAAGATA
GCTCTTCAAATATCGAGTTATCATTAATTATTGCAAGTGATGATGAAACACTTGAATTGG
GTATTGATGAAAGTTACTTTTTATTAGTGAATCAAGACACTTATCAAATAAAAGCCAATA
CAATCTATGGTGCAATGAGAGGTTTAGAAACATTCAAACAAATGGTAGTTTATGATGTTG
TAGAAAATAGTTACTCATTGACATGTGCTGAAGTTGTAGACTATCCAACCTATCAATGGA
GAGGATTGTTGGTTGATAATGCCCGTCATTTCCTTCCAAAGAATATGGTACTTCATATTA
TTGACTCGATGGGTTATAATAAATTCAATACTATGCATTGGCATTTAATAGATACTGTTG
CATTCCCAGTGGAATCGAAAACCTATCCAAAGTTAACTGAAGCATTACTTGGACCTGGTG
CAATTATTACACATGATGATATTTTAGAGGTGGTTGCCTATGCTAAAACCTATGGAATTC
GTGTGATTCCTGAATTTGATGTTCXXXXXXXXXXATGGTGACATATTGAAATTCTTTAAA
AACTCATAATCCTNACNCTGATTCACCCTATGGTATCGCACCAGAGGTTATGGATACCTT
TGTAAAGAGTTGNGCTGGTTATTGTGTAATCACCTATATTCTTGGTATTGGTGATAGACA
TTTAGATAATCTTTTATTAACTCCAAATGGTAAATTATTCCATATCGATTTCGGTTACAT
TCTTGGTAAAGATCCAAAGATATTACCACCACCAATGAAACTTTGCAAGGAAATGGTCTT
GGGTATGGGTGGTGAAAATAGTAANCACTATGAAAAATTCAAACAACTCTGTTGCGAAGC
TTATAATATCCTCCGTAAATCTTCTCATTTAATACTCAATCTTTTCGCTCTCATGGTTGA
TGCTTCAATACCTTCAATTTCTGATGATAAGGAAAAGAGTATCTTAAAGGTTCAAGA
sequence update 2001. 6. 1
Translated Amino Acid sequence 
LSVGSISIKSNIESTILSISISRYQSLFFPFVSNNVLKDSSSNIELSLIIASDDETLELG
IDESYFLLVNQDTYQIKANTIYGAMRGLETFKQMVVYDVVENSYSLTCAEVVDYPTYQWR
GLLVDNARHFLPKNMVLHIIDSMGYNKFNTMHWHLIDTVAFPVESKTYPKLTEALLGPGA
IITHDDILEVVAYAKTYGIRVIPEFDV---

---GDILKFFKNS*sxx*ftlwyrtrgygylckelxwllcnhlyswyw**tfr*sfinsk
w*iipyrfrlhsw*rskditttnetlqgnglgygw*k**xl*kiqttllrsl*ypp*ifs
fntqsfrshg*cfntfnf***gkeylkgsr
Translated Amino Acid sequence (All Frames) 
Frame A:
nyq*dqyqlkvilnqqy*vfqfqdirvyfshlfqimf*kialqissyh*llqvmmkhlnw
vlmkvtfy**iktlik*kpiqsmvq*ev*khsnkw*fmml*kivth*hvlkl*tiqping
edcwlimpvisfqriwyfilltrwviinsilcigi**illhsqwnrkpiqs*lkhyldlv
qllhmmif*rwlpmlkpmefv*flnlmf---

---mvty*nslkthnpxxdspygiapevmdtfvksxagycvityilgigdrhldnllltp
ngklfhidfgyilgkdpkilpppmklckemvlgmggensxhyekfkqlcceaynilrkss
hlilnlfalmvdasipsisddkeksilkvq

Frame B:
iisrinin*k*y*innikyfnfkisefifpicfk*cfkr*lfkyrviinyck***nt*ig
y**kllfisesrhlsnksqynlwcnerfrniqtngsl*ccrk*llidmc*scrlsnlsme
rivg**cpsfpskeygtsyy*ldgl**iqyyalafnryccipsgienlskvn*sitwtwc
nyyt**yfrggclc*nlwnscds*i*c---

---w*hieil*kliiltlihpmvshqrlwipl*rvxlviv*spiflvlvidi*iify*lq
mvnysisisvtflvkiqryyhhq*nfarkwswvwvvkivxtmknsnnsvakliissvnll
i*ysifslswlmlqylqflmirkrvs*rfk

Frame C:
LSVGSISIKSNIESTILSISISRYQSLFFPFVSNNVLKDSSSNIELSLIIASDDETLELG
IDESYFLLVNQDTYQIKANTIYGAMRGLETFKQMVVYDVVENSYSLTCAEVVDYPTYQWR
GLLVDNARHFLPKNMVLHIIDSMGYNKFNTMHWHLIDTVAFPVESKTYPKLTEALLGPGA
IITHDDILEVVAYAKTYGIRVIPEFDV---

---GDILKFFKNS*sxx*ftlwyrtrgygylckelxwllcnhlyswyw**tfr*sfinsk
w*iipyrfrlhsw*rskditttnetlqgnglgygw*k**xl*kiqttllrsl*ypp*ifs
fntqsfrshg*cfntfnf***gkeylkgsr
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AFJ603 (AFJ603Q) /CSM/AF/AFJ6-A/AFJ603Q.Seq.d/                       2052   0.0
AFN575 (AFN575Q) /CSM/AF/AFN5-D/AFN575Q.Seq.d/                        930   0.0
VFC223 (VFC223Q) /CSM/VF/VFC2-A/VFC223Q.Seq.d/                        884   0.0
VHK827 (VHK827Q) /CSM/VH/VHK8-B/VHK827Q.Seq.d/                        848   0.0
VHJ261 (VHJ261Q) /CSM/VH/VHJ2-C/VHJ261Q.Seq.d/                        839   0.0
CHO259 (CHO259Q) /CSM/CH/CHO2-C/CHO259Q.Seq.d/                        839   0.0
CHI589 (CHI589Q) /CSM/CH/CHI5-D/CHI589Q.Seq.d/                        839   0.0
CFA858 (CFA858Q) /CSM/CF/CFA8-C/CFA858Q.Seq.d/                        839   0.0
AHB779 (AHB779Q) /CSM/AH/AHB7-D/AHB779Q.Seq.d/                        839   0.0
AHA604 (AHA604Q) /CSM/AH/AHA6-A/AHA604Q.Seq.d/                        817   0.0
own update 2004.12.25
Homology vs DNA 

                                                               Score     E
Sequences producing significant alignments:                    (bits)  Value  N

U23480|U23480.1 Dictyostelium discoideum phosphatidylinositol 3-kinase (PIK5) mRNA, complete cds.   807  0.0  2
J04065|J04065.1 D.discoideum beta-N-acetylhexosaminidase (nagA) mRNA, complete cds.    66  7e-42  6
CB667593|CB667593.1 OSJNEd14P22.r OSJNEd Oryza sativa (japonica cultivar-group) cDNA clone OSJNEd14P22 3', mRNA sequence.    78  3e-10  1
CB627919|CB627919.1 ---.    78  3e-10  1
CB676144|CB676144.1 OSJNEe12D23.r OSJNEe Oryza sativa (japonica cultivar-group) cDNA clone OSJNEe12D23 3', mRNA sequence.    78  3e-10  1
AC135425|AC135425.1 Oryza sativa (japonica cultivar-group) chromosome 5 clone P0453H11, *** SEQUENCING IN PROGRESS ***, 6 ordered pieces.    78  1e-08  2
CD005404|CD005404.1 VVB047G11_325362 An expressed sequence tag database for abiotic stressed leaves of Vitis vinifera var. Chardonnay Vitis vinifera cDNA clone VVB047G11 5, mRNA sequence.    48  1e-04  2
CF208808|CF208808.1 CAB20003_Ia_Ra_A08 Cabernet Sauvignon Flower bloom - CAB2 Vitis vinifera cDNA clone CAB20003_Ia_Ra_A08 3', mRNA sequence.    48  2e-04  2
CF208719|CF208719.1 CAB20003_Ia_Fa_A08 Cabernet Sauvignon Flower bloom - CAB2 Vitis vinifera cDNA clone CAB20003_Ia_Fa_A08 5', mRNA sequence.    48  2e-04  2
BU424873|BU424873.1 603958628F1 CSEQRBN09 Gallus gallus cDNA clone ChEST930g8 5', mRNA sequence.    58  2e-04  1
dna update 2003. 9. 5
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(Q54SC9) RecName: Full=Beta-hexosaminidase subunit A2;          ...   411   e-113
(P13723) RecName: Full=Beta-hexosaminidase subunit A1;          ...   276   1e-72
(P42339) RecName: Full=Phosphatidylinositol 3-kinase VPS34;     ...   195   2e-48
U10669_1(U10669|pid:none) Arabidopsis thaliana phosphatidylinosi...   195   2e-48
AY080724_1(AY080724|pid:none) Arabidopsis thaliana putative phos...   195   2e-48
AY701317_1(AY701317|pid:none) Nicotiana tabacum phosphoinositide...   194   6e-48
AY142114_1(AY142114|pid:none) Brassica napus phosphatidylinosito...   193   7e-48
AJ517208_1(AJ517208|pid:none) Medicago truncatula mRNA for phosp...   193   9e-48
AM477849_2(AM477849|pid:none) Vitis vinifera contig VV78X098823....   193   9e-48
DQ118424_1(DQ118424|pid:none) Phaseolus vulgaris phosphatidylino...   192   2e-47
protein update 2009. 4.24
PSORT 

 psg: 0.74  gvh: 0.37  alm: 0.42  top: 0.53  tms: 0.00  mit: 0.30  mip: 0.05
 nuc: 0.00  erl: 0.00  erm: 0.20  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 40.0 %: nuclear
	 24.0 %: cytoplasmic
	 20.0 %: cytoskeletal
	  4.0 %: vacuolar
	  4.0 %: mitochondrial
	  4.0 %: extracellular, including cell wall
	  4.0 %: peroxisomal

>> prediction for AFJ603 is nuc
5' end seq. ID AFJ603F
5' end seq. 
>AFJ603F.Seq
AATTATCAGTAGGATCAATATCAATTAAAAGTAATATTGAATCAACAATATTAAGTATTT
CAATTTCAAGATATCAGAGTTTATTTTTCCCATTTGTTTCAAATAATGTTTTAAAAGATA
GCTCTTCAAATATCGAGTTATCATTAATTATTGCAAGTGATGATGAAACACTTGAATTGG
GTATTGATGAAAGTTACTTTTTATTAGTGAATCAAGACACTTATCAAATAAAAGCCAATA
CAATCTATGGTGCAATGAGAGGTTTAGAAACATTCAAACAAATGGTAGTTTATGATGTTG
TAGAAAATAGTTACTCATTGACATGTGCTGAAGTTGTAGACTATCCAACCTATCAATGGA
GAGGATTGTTGGTTGATAATGCCCGTCATTTCCTTCCAAAGAATATGGTACTTCATATTA
TTGACTCGATGGGTTATAATAAATTCAATACTATGCATTGGCATTTAATAGATACTGTTG
CATTCCCAGTGGAATCGAAAACCTATCCAAAGTTAACTGAAGCATTACTTGGACCTGGTG
CAATTATTACACATGATGATATTTTAGAGGTGGTTGCCTATGCTAAAACCTATGGAATTC
GTGTGATTCCTGAATTTGATGTTC----------
Length of 5' end seq. 624
3' end seq. ID AFJ603Z
3' end seq. 
>AFJ603Z.Seq
----------ATGGTGACATATTGAAATTCTTTAAAAACTCATAATCCTNACNCTGATTC
ACCCTATGGTATCGCACCAGAGGTTATGGATACCTTTGTAAAGAGTTGNGCTGGTTATTG
TGTAATCACCTATATTCTTGGTATTGGTGATAGACATTTAGATAATCTTTTATTAACTCC
AAATGGTAAATTATTCCATATCGATTTCGGTTACATTCTTGGTAAAGATCCAAAGATATT
ACCACCACCAATGAAACTTTGCAAGGAAATGGTCTTGGGTATGGGTGGTGAAAATAGTAA
NCACTATGAAAAATTCAAACAACTCTGTTGCGAAGCTTATAATATCCTCCGTAAATCTTC
TCATTTAATACTCAATCTTTTCGCTCTCATGGTTGATGCTTCAATACCTTCAATTTCTGA
TGATAAGGAAAAGAGTATCTTAAAGGTTCAAGA
Length of 3' end seq. 443
Connected seq. ID AFJ603P
Connected seq. 
>AFJ603P.Seq
AATTATCAGTAGGATCAATATCAATTAAAAGTAATATTGAATCAACAATATTAAGTATTT
CAATTTCAAGATATCAGAGTTTATTTTTCCCATTTGTTTCAAATAATGTTTTAAAAGATA
GCTCTTCAAATATCGAGTTATCATTAATTATTGCAAGTGATGATGAAACACTTGAATTGG
GTATTGATGAAAGTTACTTTTTATTAGTGAATCAAGACACTTATCAAATAAAAGCCAATA
CAATCTATGGTGCAATGAGAGGTTTAGAAACATTCAAACAAATGGTAGTTTATGATGTTG
TAGAAAATAGTTACTCATTGACATGTGCTGAAGTTGTAGACTATCCAACCTATCAATGGA
GAGGATTGTTGGTTGATAATGCCCGTCATTTCCTTCCAAAGAATATGGTACTTCATATTA
TTGACTCGATGGGTTATAATAAATTCAATACTATGCATTGGCATTTAATAGATACTGTTG
CATTCCCAGTGGAATCGAAAACCTATCCAAAGTTAACTGAAGCATTACTTGGACCTGGTG
CAATTATTACACATGATGATATTTTAGAGGTGGTTGCCTATGCTAAAACCTATGGAATTC
GTGTGATTCCTGAATTTGATGTTC----------ATGGTGACATATTGAAATTCTTTAAA
AACTCATAATCCTNACNCTGATTCACCCTATGGTATCGCACCAGAGGTTATGGATACCTT
TGTAAAGAGTTGNGCTGGTTATTGTGTAATCACCTATATTCTTGGTATTGGTGATAGACA
TTTAGATAATCTTTTATTAACTCCAAATGGTAAATTATTCCATATCGATTTCGGTTACAT
TCTTGGTAAAGATCCAAAGATATTACCACCACCAATGAAACTTTGCAAGGAAATGGTCTT
GGGTATGGGTGGTGAAAATAGTAANCACTATGAAAAATTCAAACAACTCTGTTGCGAAGC
TTATAATATCCTCCGTAAATCTTCTCATTTAATACTCAATCTTTTCGCTCTCATGGTTGA
TGCTTCAATACCTTCAATTTCTGATGATAAGGAAAAGAGTATCTTAAAGGTTCAAGA
Length of connected seq. 1067
Full length Seq ID -
Full length Seq. -
Length of full length seq. -