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Dicty_cDB
Contig List | Clone List | cDNA Library List
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
SHI895
Library SH
(Link to library)
Clone ID SHI895
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16344-1
Original site URL
Representative seq. ID
(Link to Original site)
Representative DNA sequence 
>SHI895 (SHI895Q) /CSM/SH/SHI8-D/SHI895Q.Seq.d/
ATTCAATCAAACAAACAAAAAACAACAATTTAAAAAAACAATAATTTATAGTAAAGTAAA
AACAATTAAAGAATCACTAATTGTTTTTTTTCTCCTCCTCACTATAAATTCCAATATTTT
TTTTTAAATTAATTTCCAGCTTTTCTGTTTTTTTACACAATCACAACCAACCCTATATCA
TTACTACCAACCCTATACCATTACAATCTTATTTATTAAATAATTATTATTTGTTGTATT
ATTTTAGTGTATATTTGTTGATTTAATATTTATTAGCAAGTAACAAACAAAAAAAAAAAT
AAXXXXXXXXXX
sequence update 2002.10.25
Translated Amino Acid sequence 
sikqtknnnlkkq*fivk*kqlknh*lfffsssl*IPIFFFKLISSFSVFLHNHNQPYII
TTNPIPLQSYLLNNYYLLYYFSVYLLI*yllasnkqkkk---
Translated Amino Acid sequence (All Frames) 
Frame A:
iqsnkqktti*knnnl**sknn*ritncffspphykfqyffln*fpaflffytittnpis
llptlyhynliy*iiiicciilvyic*fniy*qvtnkkkn---


Frame B:
fnqtnkkqqfkktiiyskvktikeslivffllltinsniff*infqlfcfftqsqptlyh
yyqpytitilfik*llfvvlf*cifvdlifisk*qtkkki---


Frame C:
sikqtknnnlkkq*fivk*kqlknh*lfffsssl*IPIFFFKLISSFSVFLHNHNQPYII
TTNPIPLQSYLLNNYYLLYYFSVYLLI*yllasnkqkkk---
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SHI895 (SHI895Q) /CSM/SH/SHI8-D/SHI895Q.Seq.d/                        170   8e-42
SLD696 (SLD696Q) /CSM/SL/SLD6-D/SLD696Q.Seq.d/                        165   5e-40
SHL607 (SHL607Q) /CSM/SH/SHL6-A/SHL607Q.Seq.d/                        165   5e-40
SHL325 (SHL325Q) /CSM/SH/SHL3-B/SHL325Q.Seq.d/                        165   5e-40
SHK865 (SHK865Q) /CSM/SH/SHK8-C/SHK865Q.Seq.d/                        165   5e-40
SHK650 (SHK650Q) /CSM/SH/SHK6-C/SHK650Q.Seq.d/                        165   5e-40
SHK536 (SHK536Q) /CSM/SH/SHK5-B/SHK536Q.Seq.d/                        165   5e-40
SHK515 (SHK515Q) /CSM/SH/SHK5-A/SHK515Q.Seq.d/                        165   5e-40
SHK362 (SHK362Q) /CSM/SH/SHK3-C/SHK362Q.Seq.d/                        165   5e-40
SHJ501 (SHJ501Q) /CSM/SH/SHJ5-A/SHJ501Q.Seq.d/                        165   5e-40
own update 2004.12.25
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

AG377626|AG377626.1 Mus musculus molossinus DNA, clone:MSMg01-185L14.TJ, genomicsurvey sequence.    36   9.5    2
dna update 2006. 5. 3
Homology vs Protein 

 ***** No hits found ******

Lambda     K      H
   0.318    0.134    0.401

Gapped
Lambda     K      H
   0.267   0.0410    0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3039690
Number of Hits to DB: 263,767,470
protein update 2009. 4.22
PSORT 

 psg: 0.94  gvh: 0.48  alm: 0.34  top: 0.53  tms: 0.00  mit: 0.46  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 60.0 %: mitochondrial
	 20.0 %: nuclear
	  8.0 %: cytoplasmic
	  4.0 %: cytoskeletal
	  4.0 %: vacuolar
	  4.0 %: extracellular, including cell wall

>> prediction for SHI895 is mit
5' end seq. ID SHI895F
5' end seq. 
>SHI895F.Seq
ATTCAATCAAACAAACAAAAAACAACAATTTAAAAAAACAATAATTTATAGTAAAGTAAA
AACAATTAAAGAATCACTAATTGTTTTTTTTCTCCTCCTCACTATAAATTCCAATATTTT
TTTTTAAATTAATTTCCAGCTTTTCTGTTTTTTTACACAATCACAACCAACCCTATATCA
TTACTACCAACCCTATACCATTACAATCTTATTTATTAAATAATTATTATTTGTTGTATT
ATTTTAGTGTATATTTGTTGATTTAATATTTATTAGCAAGTAACAAACAAAAAAAAAAAT
AANNNNNNNNNN
Length of 5' end seq. 312
3' end seq. ID -
3' end seq. -
Length of 3' end seq. -
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -