>SHI844 (SHI844Q) /CSM/SH/SHI8-B/SHI844Q.Seq.d/
AAATTTATTTTGTAATATTAAAAAAATAAAATAAAATAAAAAAAAGATGTCATGGGCTAG
AAATATTCAATCTAGAATCCAACAACAACAACAGTTACAAAAACCAGGTGGTTTAGCACC
ACCATCTGGTAATGAAACACCACAAAAACAACCATCATCACCAACATTATCAGCTTTATC
ATCACCAATAACTTCTTTAACAAATGCATTAAGAGGTAGTGGTGGTATATCACAACCAAC
TACAAATACAACATCTTTAACATCAACATCACCACCATCACCAACTATATCAACAACAAC
AACACAAGTTAAAGTTGGCCAAACATCATTCACAACATCAACAAATTTACAAGCTGCTGC
ATCTGGTAATAATTTACAAGCGAGTATTCAAACAACAAATATAACAGTTACATCACCTTC
AATGGCAAGTCCAATTGGTACATCAACAGGTATACAAAATCCAAATGCTAAACCAAGTTC
ATTACCATCACCATCACAATCACCAATGCAAACTAGAAATACTTCTGCCCCAACTAATAA
TAATAATAATAATAATACTGCTACTACTACTACTCCTACTACTACTACTACTACTACCAC
TACTACCACTACTACCACTACTACCACTACTACACCATCAACATCTACTACAACTACACC
AACAACATCATCATCAAATTXXXXXXXXXX

nlfcnikkik*NKKKMSWARNIQSRIQQQQQLQKPGGLAPPSGNETPQKQPSSPTLSALS
SPITSLTNALRGSGGISQPTTNTTSLTSTSPPSPTISTTTTQVKVGQTSFTTSTNLQAAA
SGNNLQASIQTTNITVTSPSMASPIGTSTGIQNPNAKPSSLPSPSQSPMQTRNTSAPTNN
NNNNNTATTTTPTTTTTTTTTTTTTTTTTTTPSTSTTTTPTTSSSN---

Frame A:
kfil*y*knkik*kkdvmg*kysi*npttttvtktrwfsttiw**nttkttiitniisfi
itnnffnkcikr*wwyittnykynifninittitnyinnnnts*swpniihninkftscc
iw**ftseysnnkynsyitfngksnwyinrytkskc*tkfititititnan*kyfcpn**
*****ycyyyysyyyyyyyhyyhyyhyyhyytiniyynytnniiik---


Frame B:
nlfcnikkik*NKKKMSWARNIQSRIQQQQQLQKPGGLAPPSGNETPQKQPSSPTLSALS
SPITSLTNALRGSGGISQPTTNTTSLTSTSPPSPTISTTTTQVKVGQTSFTTSTNLQAAA
SGNNLQASIQTTNITVTSPSMASPIGTSTGIQNPNAKPSSLPSPSQSPMQTRNTSAPTNN
NNNNNTATTTTPTTTTTTTTTTTTTTTTTTTPSTSTTTTPTTSSSN---


Frame C:
iyfvilkk*nkikkrchgleifnlesnnnnsyknqvv*hhhlvmkhhknnhhhqhyqlyh
hq*ll*qmh*evvvvyhnqlqiqhl*hqhhhhhqlyqqqqhklklakhhsqhqqiykllh
lviiykrvfkqqi*qlhhlqwqvqlvhqqvykiqmlnqvhyhhhhnhqckleillpqlii
iiiiilllllllllllllpllpllpllpllhhqhllqlhqqhhhq---

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

VHO680 (VHO680Q) /CSM/VH/VHO6-D/VHO680Q.Seq.d/                        965   0.0
VHK555 (VHK555Q) /CSM/VH/VHK5-C/VHK555Q.Seq.d/                        965   0.0
VHG393 (VHG393Q) /CSM/VH/VHG3-D/VHG393Q.Seq.d/                        965   0.0
SHI844 (SHI844Q) /CSM/SH/SHI8-B/SHI844Q.Seq.d/                        965   0.0
SHF337 (SHF337Q) /CSM/SH/SHF3-B/SHF337Q.Seq.d/                        965   0.0
SHE531 (SHE531Q) /CSM/SH/SHE5-B/SHE531Q.Seq.d/                        965   0.0
SHB791 (SHB791Q) /CSM/SH/SHB7-D/SHB791Q.Seq.d/                        965   0.0
SHA296 (SHA296Q) /CSM/SH/SHA2-D/SHA296Q.Seq.d/                        965   0.0
CHR659 (CHR659Q) /CSM/CH/CHR6-C/CHR659Q.Seq.d/                        965   0.0
CHE709 (CHE709Q) /CSM/CH/CHE7-A/CHE709Q.Seq.d/                        965   0.0

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

AC114261|AC114261.2 Dictyostelium discoideum chromosome 2 map 126059-159710 strain AX4,complete sequence.    50   2e-08  6
DQ121034|DQ121034.1 Hucho taimen clone ZA-30 microsatellite sequence.    36   2e-07  5
AY160100|AY160100.1 Dictyostelium discoideum nucleotide exchange factor RasGEF K (gefK) gene, complete cds.    38   7e-07  7
G67741|G67741.1 D4Mon22 RPCI-23 mouse BAC clone 118E21 Mus musculus STS genomic, sequence tagged site.    38   1e-06  3
AY160094|AY160094.1 Dictyostelium discoideum nucleotide exchange factor RasGEF E (gefE) gene, complete cds.    50   2e-06  4
AC179134|AC179134.1 Strongylocentrotus purpuratus clone R3-4011N3, WORKING DRAFT SEQUENCE, 19 unordered pieces.    44   2e-06  4
AC116957|AC116957.2 Dictyostelium discoideum chromosome 2 map 1685067-2090751 strain AX4, complete sequence.    50   7e-06  6
BX119919|BX119919.5 Human DNA sequence from clone RP11-987D21 on chromosome X.    42   8e-06  5
AC116963|AC116963.2 Dictyostelium discoideum chromosome 2 map 4657875-4914984 strain AX4, complete sequence.    52   8e-06  7
AY232272|AY232272.1 Dictyostelium discoideum putative protein Roco10 (roco10) gene, complete cds.    36   1e-05  6

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CU234118_4778(CU234118|pid:none) Bradyrhizobium sp. ORS278,compl...    34   4.5
BX571965_1720(BX571965|pid:none) Burkholderia pseudomallei strai...    33   10.0
EF423808_1(EF423808|pid:none) Burkholderia pseudomallei autotran...    33   10.0

 psg: 0.52  gvh: 0.56  alm: 0.50  top: 0.53  tms: 0.00  mit: 0.31  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 36.0 %: cytoplasmic
	 28.0 %: mitochondrial
	 24.0 %: nuclear
	  4.0 %: cytoskeletal
	  4.0 %: vacuolar
	  4.0 %: vesicles of secretory system

>> prediction for SHI844 is cyt

>SHI844F.Seq
AAATTTATTTTGTAATATTAAAAAAATAAAATAAAATAAAAAAAAGATGTCATGGGCTAG
AAATATTCAATCTAGAATCCAACAACAACAACAGTTACAAAAACCAGGTGGTTTAGCACC
ACCATCTGGTAATGAAACACCACAAAAACAACCATCATCACCAACATTATCAGCTTTATC
ATCACCAATAACTTCTTTAACAAATGCATTAAGAGGTAGTGGTGGTATATCACAACCAAC
TACAAATACAACATCTTTAACATCAACATCACCACCATCACCAACTATATCAACAACAAC
AACACAAGTTAAAGTTGGCCAAACATCATTCACAACATCAACAAATTTACAAGCTGCTGC
ATCTGGTAATAATTTACAAGCGAGTATTCAAACAACAAATATAACAGTTACATCACCTTC
AATGGCAAGTCCAATTGGTACATCAACAGGTATACAAAATCCAAATGCTAAACCAAGTTC
ATTACCATCACCATCACAATCACCAATGCAAACTAGAAATACTTCTGCCCCAACTAATAA
TAATAATAATAATAATACTGCTACTACTACTACTCCTACTACTACTACTACTACTACCAC
TACTACCACTACTACCACTACTACCACTACTACACCATCAACATCTACTACAACTACACC
AACAACATCATCATCAAATTNNNNNNNNNN