SHI833
Library SH
(Link to library)
Clone ID SHI833
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16308-1
Original site URL
Representative seq. ID
(Link to Original site)
Representative DNA sequence
>SHI833 (SHI833Q) /CSM/SH/SHI8-B/SHI833Q.Seq.d/
ATTAAAATAAAATTCATTTAATAATAATAATTTAATTTTTTTCATAGTATTCAAAGATAT
AATGAAAAACTTTTATTATTTTATATTAATTTTATTATTTTTTAATGAAGTTTGCTATTC
ATTAAAAGATGGTGAAATTAAACTTCATTTAATTCCACATTCACATTGTGATTCTGGATG
GACATCAACAATGAACGAATATTATATGGGTCAAGTTAAAAGTATTATATCATCAATGGT
TCAATCATTAAATGTTGAATCAAATCCACCTAGAAAATTTGTTTGGTCTGAAATTGGATT
TTTAGAACAATGGTGGGATGATATGCCAATTGAAATTAAAAATGATTTTATAAAACATGT
TAAAAATGATAGAATTGAATTTGTAAATGGTGGATGGGTAATGAATGATGAAGCATGTGC
AAGTTTAGAAAGTGTAATTAGACAATTATCAAATGGACATAAATTTATTAGAGAGAAATT
TGGAAAACAACCAGAGAGTGGATGGCAAATTGATCCATTTGGACATTCATCATTGACACC
AACATTACAAGCTCAATTTGGTTATAAACATGTTGTATTGAATCGTATTCACTATGAATT
GAAAAAGAAATTTAAAGAAGAAAAGAATTTACAATTTAAATGGXXXXXXXXXX
sequence update 2002.10.25
Translated Amino Acid sequence
lk*NSFNNNNLIFFIVFKDIMKNFYYFILILLFFNEVCYSLKDGEIKLHLIPHSHCDSGW
TSTMNEYYMGQVKSIISSMVQSLNVESNPPRKFVWSEIGFLEQWWDDMPIEIKNDFIKHV
KNDRIEFVNGGWVMNDEACASLESVIRQLSNGHKFIREKFGKQPESGWQIDPFGHSSLTP
TLQAQFGYKHVVLNRIHYELKKKFKEEKNLQFK---


Translated Amino Acid sequence (All Frames)
Frame A:
ikikfi****fnffhsiqryneklllfyinfiif**sllfikrw*n*tsfnstftl*fwm
dinnerilygss*kyyiingsiikc*ikst*kiclv*nwifrtmvg*yan*n*k*fyktc
*k**n*ickwwmgne**smckfrkcn*tiikwt*iy*reiwkttrewman*siwtfiidt
nitssiwl*tcciesysl*iekei*rrkefti*m---


Frame B:
lk*NSFNNNNLIFFIVFKDIMKNFYYFILILLFFNEVCYSLKDGEIKLHLIPHSHCDSGW
TSTMNEYYMGQVKSIISSMVQSLNVESNPPRKFVWSEIGFLEQWWDDMPIEIKNDFIKHV
KNDRIEFVNGGWVMNDEACASLESVIRQLSNGHKFIREKFGKQPESGWQIDPFGHSSLTP
TLQAQFGYKHVVLNRIHYELKKKFKEEKNLQFK---


Frame C:
*nkihliiii*ffs*yski**ktfiily*fyyflmkfaih*kmvklnfi*fhihivildg
hqq*tniiwvklkvlyhqwfnh*mlnqihlenlfglkldf*nnggmicqlklkmil*nml
kmielnl*mvdg**mmkhvqv*kv*ldnyqmdinllernlennqrvdgklihldihh*hq
hyklnlvinmly*ivftmn*krnlkkkriynln---


Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

SHL340 (SHL340Q) /CSM/SH/SHL3-B/SHL340Q.Seq.d/ 1068 0.0
SHL163 (SHL163Q) /CSM/SH/SHL1-C/SHL163Q.Seq.d/ 1068 0.0
SHJ609 (SHJ609Q) /CSM/SH/SHJ6-A/SHJ609Q.Seq.d/ 1068 0.0
SHI833 (SHI833Q) /CSM/SH/SHI8-B/SHI833Q.Seq.d/ 1068 0.0
SHI645 (SHI645Q) /CSM/SH/SHI6-B/SHI645Q.Seq.d/ 1068 0.0
SHI325 (SHI325Q) /CSM/SH/SHI3-B/SHI325Q.Seq.d/ 1068 0.0
SHH546 (SHH546Q) /CSM/SH/SHH5-B/SHH546Q.Seq.d/ 1068 0.0
SHG272 (SHG272Q) /CSM/SH/SHG2-C/SHG272Q.Seq.d/ 1068 0.0
SHF162 (SHF162Q) /CSM/SH/SHF1-C/SHF162Q.Seq.d/ 1068 0.0
SHE818 (SHE818Q) /CSM/SH/SHE8-A/SHE818Q.Seq.d/ 1068 0.0

own update 2004.12.25
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

CF445746|CF445746.1 EST682091 normalized cDNA library of onion Allium cepa cDNA cloneACAHS20, mRNA sequence. 60 1e-08 2
BQ593037|BQ593037.1 E012375-024-028-C05-SP6 MPIZ-ADIS-024-developing root Beta vulgaris cDNA clone 024-028-C05 5-PRIME, mRNA sequence. 44 3e-06 2
CF196667|CF196667.1 Ir64bi1.6_B04 IR64-BI Oryza sativa (indica cultivar-group) cDNA clone IR64-BI1.6B04 5', mRNA sequence. 56 4e-05 2
BG449666|BG449666.1 NF055D11IN1F1092 Insect herbivory Medicago truncatula cDNA clone NF055D11IN 5', mRNA sequence. 58 3e-04 1
BQ141173|BQ141173.1 NF016G07PH1F1056 Phoma-infected Medicago truncatula cDNA clone NF016G07PH 5', mRNA sequence. 58 3e-04 1
DN812276|M2A1_RAT Alpha-mannosidase II (Mannosyl-oligosaccharide 1,3-1,6-alpha-mannosidase) (MAN II) (Golgi alpha-mannosidase II) (Mannosidase alpha class 2A member 1), mRNA sequence. 56 0.001 1
CV688215|CV688215.1 sjs2-16-2_G01_sjs2-16-2G01-T3 SJS Schistosoma japonicum cDNA, mRNA sequence. 56 0.001 1
CV682907|CV682907.1 service43_H06_sjs2-16-2B11-T3 SJS Schistosoma japonicum cDNA, mRNA sequence. 56 0.001 1
CV682854|CV682854.1 service30_G09_sjs2-14-10C09-T3 SJS Schistosoma japonicum cDNA, mRNA sequence. 56 0.001 1
BU804021|BU804021.1 SJFBFG06 SJF Schistosoma japonicum cDNA, mRNA sequence. 56 0.001 1
dna update 2006. 5. 2
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

(Q54YC4) RecName: Full=Alpha-mannosidase D; EC=3.2.1.24... 147 3e-34
(Q54YF7) RecName: Full=Alpha-mannosidase B; EC=3.2.1.24... 145 7e-34
BC142656_1(BC142656|pid:none) Homo sapiens mannosidase, alpha, c... 139 5e-32
AB011474_23(AB011474|pid:none) Arabidopsis thaliana genomic DNA,... 139 5e-32
(P27046) RecName: Full=Alpha-mannosidase 2; EC=3.2.1.11... 139 9e-32
AC148217_12(AC148217|pid:none) Medicago truncatula clone mth2-20... 137 2e-31
(P28494) RecName: Full=Alpha-mannosidase 2; EC=3.2.1.11... 137 3e-31
M24353_1(M24353|pid:none) Rattus norvegicus alpha-mannosidase II... 137 3e-31
AL391146_7(AL391146|pid:none) Arabidopsis thaliana DNA chromosom... 137 3e-31
AK161799_1(AK161799|pid:none) Mus musculus 13 days embryo male t... 135 8e-31
protein update 2009. 4.22
PSORT

psg: 0.94 gvh: 0.66 alm: 0.50 top: 0.47 tms: 0.00 mit: 0.29 mip: 0.00
nuc: 0.00 erl: 0.00 erm: 0.00 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

36.0 %: extracellular, including cell wall
28.0 %: cytoplasmic
16.0 %: mitochondrial
8.0 %: cytoskeletal
8.0 %: nuclear
4.0 %: vacuolar

>> prediction for SHI833 is exc

5' end seq. ID SHI833F
5' end seq.
>SHI833F.Seq
ATTAAAATAAAATTCATTTAATAATAATAATTTAATTTTTTTCATAGTATTCAAAGATAT
AATGAAAAACTTTTATTATTTTATATTAATTTTATTATTTTTTAATGAAGTTTGCTATTC
ATTAAAAGATGGTGAAATTAAACTTCATTTAATTCCACATTCACATTGTGATTCTGGATG
GACATCAACAATGAACGAATATTATATGGGTCAAGTTAAAAGTATTATATCATCAATGGT
TCAATCATTAAATGTTGAATCAAATCCACCTAGAAAATTTGTTTGGTCTGAAATTGGATT
TTTAGAACAATGGTGGGATGATATGCCAATTGAAATTAAAAATGATTTTATAAAACATGT
TAAAAATGATAGAATTGAATTTGTAAATGGTGGATGGGTAATGAATGATGAAGCATGTGC
AAGTTTAGAAAGTGTAATTAGACAATTATCAAATGGACATAAATTTATTAGAGAGAAATT
TGGAAAACAACCAGAGAGTGGATGGCAAATTGATCCATTTGGACATTCATCATTGACACC
AACATTACAAGCTCAATTTGGTTATAAACATGTTGTATTGAATCGTATTCACTATGAATT
GAAAAAGAAATTTAAAGAAGAAAAGAATTTACAATTTAAATGGNNNNNNNNNN
Length of 5' end seq. 653
3' end seq. ID -
3' end seq. -
Length of 3' end seq. -
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -