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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
SHI783
Library SH
(Link to library)
Clone ID SHI783
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig -
Original site URL
Representative seq. ID
(Link to Original site)
Representative DNA sequence 
>SHI783 (SHI783Q) /CSM/SH/SHI7-D/SHI783Q.Seq.d/
CATTGTATATAATATTTTTAAATATATNTATTAATATATATTAATATATTAATATTAATA
AAAGGAAAATATTATATNCATTATTATTAATATCAAGTNTAATTNTAAATACTGTATTAA
ATATTTCATCACAAGTATATGATCAACGTATTTTGGCATTAAAAGGAAAATGTTATTTAN
ATTCAAATAAAAATGCATTGTATGATGAAGXXXXXXXXXX
sequence update 2002.10.25
Translated Amino Acid sequence 
lyiiflnixiniy*YININKRKILYXLLLISSXIXNTVLNISSQVYDQRILALKGKCYLX
SNKNALYDE---
Translated Amino Acid sequence (All Frames) 
Frame A:
hci*yf*iyxliyinililikgkyyxhyy*yqv*x*ily*ifhhkyminvfwh*kenvix
iqikmhcmm---


Frame B:
ivynifkyxy*yiliy*y**keniixiiinikxnxkycikyfitsi*styfgikrkmlfx
fk*kciv**---


Frame C:
lyiiflnixiniy*YININKRKILYXLLLISSXIXNTVLNISSQVYDQRILALKGKCYLX
SNKNALYDE---
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SHJ874 (SHJ874Q) /CSM/SH/SHJ8-D/SHJ874Q.Seq.d/                        214   4e-55
SHL883 (SHL883Q) /CSM/SH/SHL8-D/SHL883Q.Seq.d/                        214   4e-55
SHL880 (SHL880Q) /CSM/SH/SHL8-D/SHL880Q.Seq.d/                        214   4e-55
SHL852 (SHL852Q) /CSM/SH/SHL8-C/SHL852Q.Seq.d/                        214   4e-55
SHL845 (SHL845Q) /CSM/SH/SHL8-B/SHL845Q.Seq.d/                        214   4e-55
SHL837 (SHL837Q) /CSM/SH/SHL8-B/SHL837Q.Seq.d/                        214   4e-55
SHL833 (SHL833Q) /CSM/SH/SHL8-B/SHL833Q.Seq.d/                        214   4e-55
SHL807 (SHL807Q) /CSM/SH/SHL8-A/SHL807Q.Seq.d/                        214   4e-55
SHL805 (SHL805Q) /CSM/SH/SHL8-A/SHL805Q.Seq.d/                        214   4e-55
own update 2009. 4. 4
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

BI742812|BI742812.1 kx35c12.y1 Parastrongyloides trichosuri IL pAMP1 v1 Chiapelli McCarter Parastrongyloides trichosuri cDNA 5', mRNA sequence.    44   1.3    1
AC090899|AC090899.3 Mus musculus clone RP23-25N5, *** SEQUENCING IN PROGRESS ***, 18 unordered pieces.    38   2.8    2
DV318303|DV318303.1 NABNX32TF Aedes aegypti infected with Brugia Malayi Aedes aegypti cDNA clone NABNX32, mRNA sequence.    42   5.0    1
DV311931|DV311931.1 NABOR34TF Aedes aegypti infected with Brugia Malayi Aedes aegypti cDNA clone NABOR34, mRNA sequence.    42   5.0    1
DV288069|DV288069.1 NAAHW80TF Aedes aegypti - Fat Bodies Normalized (NAFFB2) Aedes aegypti cDNA clone NAAHW80, mRNA sequence.    42   5.0    1
DV284077|DV284077.1 NAAG583TR Aedes aegypti - Fat Bodies Normalized (NAFFB2) Aedes aegypti cDNA clone NAAG583, mRNA sequence.    42   5.0    1
DV284076|DV284076.1 NAAG583TF Aedes aegypti - Fat Bodies Normalized (NAFFB2) Aedes aegypti cDNA clone NAAG583, mRNA sequence.    42   5.0    1
DV276964|DV276964.1 NAAFQ66TR Aedes aegypti - Fat Bodies Normalized (NAFFB2) Aedes aegypti cDNA clone NAAFQ66, mRNA sequence.    42   5.0    1
DV276963|DV276963.1 NAAFQ66TF Aedes aegypti - Fat Bodies Normalized (NAFFB2) Aedes aegypti cDNA clone NAAFQ66, mRNA sequence.    42   5.0    1
DV274982|DV274982.1 NAAH551TF Aedes aegypti - Fat Bodies Normalized (NAFFB2) Aedes aegypti cDNA clone NAAH551, mRNA sequence.    42   5.0    1
dna update 2006. 4.29
Homology vs Protein 

 ***** No hits found ******

Lambda     K      H
   0.318    0.134    0.401

Gapped
Lambda     K      H
   0.267   0.0410    0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3039690
Number of Hits to DB: 134,224,618
protein update 2009. 4.22
PSORT 

 psg: 0.93  gvh: 0.70  alm: 0.52  top: 0.40  tms: 0.00  mit: 0.39  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 52.0 %: extracellular, including cell wall
	 12.0 %: mitochondrial
	  8.0 %: vacuolar
	  8.0 %: nuclear
	  8.0 %: endoplasmic reticulum
	  4.0 %: cytoplasmic
	  4.0 %: cytoskeletal
	  4.0 %: Golgi

>> prediction for SHI783 is exc
5' end seq. ID SHI783F
5' end seq. 
>SHI783F.Seq
CATTGTATATAATATTTTTAAATATATNTATTAATATATATTAATATATTAATATTAATA
AAAGGAAAATATTATATNCATTATTATTAATATCAAGTNTAATTNTAAATACTGTATTAA
ATATTTCATCACAAGTATATGATCAACGTATTTTGGCATTAAAAGGAAAATGTTATTTAN
ATTCAAATAAAAATGCATTGTATGATGAAGNNNNNNNNNN
Length of 5' end seq. 220
3' end seq. ID -
3' end seq. -
Length of 3' end seq. -
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -