>SHI732 (SHI732Q) /CSM/SH/SHI7-B/SHI732Q.Seq.d/
ATTTTTCAATACTAAATTAATCATCCTAATAATTCAATACCAACTTTATATTATTTTATG
AAAATATTGAAAAAAACAATAATAATTATAATTATTTATAATTAAATCTATATATATTTA
TTGATAAAAAAAAANCAATAAAAAAAAAAANGAAAANTAAAANTAANTTANCAAATCAAA
TTCTAANATTTTNATTTTNATTTTNATTTTNATTTTATTTTAAAAAAAAAAXXXXXXXXX
X

fsiln*ss**fntnfilfyenieknnnnynyl*LNLYIFIDKKKXIKKKXKXKXXLXNQI
LXFXFXFXFXFYFKKK---

Frame A:
ifqy*inhpnnsiptlyyfmkilkktiiiiiiyn*iyiyllikkxq*kkkxkxkxxxqik
f*xfxfxfxfxfilkk---


Frame B:
ffntkliiliiqyqlyiil*ky*kkq**l*lfiiksiyiy**kkxnkkkxex*x*xxksn
sxixixixixilf*kk---


Frame C:
fsiln*ss**fntnfilfyenieknnnnynyl*LNLYIFIDKKKXIKKKXKXKXXLXNQI
LXFXFXFXFXFYFKKK---

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SHI732 (SHI732Q) /CSM/SH/SHI7-B/SHI732Q.Seq.d/                        206   1e-52
SHK877 (SHK877Q) /CSM/SH/SHK8-D/SHK877Q.Seq.d/                        192   2e-48
SHI749 (SHI749Q) /CSM/SH/SHI7-C/SHI749Q.Seq.d/                        192   2e-48
SHH757 (SHH757Q) /CSM/SH/SHH7-C/SHH757Q.Seq.d/                        192   2e-48
SHH195 (SHH195Q) /CSM/SH/SHH1-D/SHH195Q.Seq.d/                        192   2e-48
SHF724 (SHF724Q) /CSM/SH/SHF7-A/SHF724Q.Seq.d/                        192   2e-48
SHA843 (SHA843Q) /CSM/SH/SHA8-B/SHA843Q.Seq.d/                        192   2e-48
AHR265 (AHR265Q) /CSM/AH/AHR2-C/AHR265Q.Seq.d/                        192   2e-48
AHL320 (AHL320Q) /CSM/AH/AHL3-A/AHL320Q.Seq.d/                        192   2e-48
AHI395 (AHI395Q) /CSM/AH/AHI3-D/AHI395Q.Seq.d/                        192   2e-48

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

BX571668|BX571668.20 Zebrafish DNA sequence from clone DKEY-47M8 in linkage group 10.    36   0.001  2
CT025903|CT025903.4 Zebrafish DNA sequence *** SEQUENCING IN PROGRESS *** from clone  DKEY-66H5.    42   0.001  2
AF466146|AF466146.1 Melipona bicolor mitochondrial genome, partial sequence.    34   0.003  4
AC092129|AC092129.3 Homo sapiens chromosome 16 clone RP11-140O8, complete sequence.    42   0.004  2
AC092125|AC092125.2 Homo sapiens chromosome 16 clone RP11-109D24, complete sequence.    42   0.004  2
BX950864|BX950864.17 Zebrafish DNA sequence *** SEQUENCING IN PROGRESS *** from clone DKEY-158B13.    52   0.006  1
Z97348|Z97348.1 Plasmodium falciparum MAL3P1.                      36   0.011  4
CR361541|CR361541.11 Zebrafish DNA sequence from clone DKEY-99G10 in linkage group 17.    44   0.016  4
CC273850|CC273850.1 CH261-121B22_Sp6.1 CH261 Gallus gallus genomic clone CH261-121B22, DNA sequence.    40   0.018  2
AJ511533|AJ511533.1 Candida glabrata complete mitochondrial genome.    36   0.021  4

 ***** No hits found ******

Lambda     K      H
   0.318    0.134    0.401

Gapped
Lambda     K      H
   0.267   0.0410    0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3039690
Number of Hits to DB: 106,408,616

 psg: 0.42  gvh: 0.50  alm: 0.46  top: 0.53  tms: 0.00  mit: 0.28  mip: 0.00
 nuc: 0.12  erl: 0.00  erm: 0.40  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 60.0 %: cytoplasmic
	 28.0 %: nuclear
	  8.0 %: mitochondrial
	  4.0 %: extracellular, including cell wall

>> prediction for SHI732 is cyt

>SHI732F.Seq
ATTTTTCAATACTAAATTAATCATCCTAATAATTCAATACCAACTTTATATTATTTTATG
AAAATATTGAAAAAAACAATAATAATTATAATTATTTATAATTAAATCTATATATATTTA
TTGATAAAAAAAAANCAATAAAAAAAAAAANGAAAANTAAAANTAANTTANCAAATCAAA
TTCTAANATTTTNATTTTNATTTTNATTTTNATTTTATTTTAAAAAAAAAANNNNNNNNN
N