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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
SHI721
Library SH
(Link to library)
Clone ID SHI721
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U11861-1
Original site URL
Representative seq. ID
(Link to Original site)
Representative DNA sequence 
>SHI721 (SHI721Q) /CSM/SH/SHI7-A/SHI721Q.Seq.d/
AATAATTATATGTATATATTTGTTTTTAAATAATGAAAAATTATTTTTTTTATAATTTTT
TTTTAATATAAAAAGGACCTTATATTATTTCTAAAAATTATTTTTTAAATAAATTAAAAA
AAAAAXXXXXXXXXX
sequence update 2002.10.25
Translated Amino Acid sequence 
IIICIYLFLNNEKLFFL*fffnikrtlyyf*klffk*ikkk---
Translated Amino Acid sequence (All Frames) 
Frame A:
nnymyifvfk**kiiffiiff*ykkdlilflkiif*in*kk---


Frame B:
IIICIYLFLNNEKLFFL*fffnikrtlyyf*klffk*ikkk---


Frame C:
*lyvyicf*imknyffynffli*kgpyiisknyflnklkk---
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SHJ350 (SHJ350Q) /CSM/SH/SHJ3-C/SHJ350Q.Seq.d/                        101   2e-21
SHI721 (SHI721Q) /CSM/SH/SHI7-A/SHI721Q.Seq.d/                        101   2e-21
SHI454 (SHI454Q) /CSM/SH/SHI4-C/SHI454Q.Seq.d/                        101   2e-21
SHI116 (SHI116Q) /CSM/SH/SHI1-A/SHI116Q.Seq.d/                        101   2e-21
SHF413 (SHF413Q) /CSM/SH/SHF4-A/SHF413Q.Seq.d/                        101   2e-21
SHD443 (SHD443Q) /CSM/SH/SHD4-B/SHD443Q.Seq.d/                        101   2e-21
SHD101 (SHD101Q) /CSM/SH/SHD1-A/SHD101Q.Seq.d/                        101   2e-21
SHB773 (SHB773Q) /CSM/SH/SHB7-D/SHB773Q.Seq.d/                        101   2e-21
CHN105 (CHN105Q) /CSM/CH/CHN1-A/CHN105Q.Seq.d/                        101   2e-21
CHG762 (CHG762Q) /CSM/CH/CHG7-C/CHG762Q.Seq.d/                        101   2e-21
own update 2002.12. 7
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

AC116305|AC116305.2 Dictyostelium discoideum chromosome 2 map 1005175-1418323 strainAX4, complete sequence.   101   6e-38  2
AY515252|AY515252.1 Medicago truncatula clone mth2-50E03, *** SEQUENCING IN PROGRESS ***, 14 ordered pieces.    32   0.004  5
BV628771|BV628771.1 S217P60533RE10.T0 Noemie Pan troglodytes troglodytes STS genomic, sequence tagged site.    38   0.005  2
AE014822|AE014822.1 Plasmodium falciparum 3D7 chromosome 14 section 7 of 13 of the complete sequence.    42   0.007  8
AC007483|AC007483.7 Homo sapiens, clone RP11-72A1, complete sequence.    38   0.011  3
AC096295|AC096295.7 Rattus norvegicus clone CH230-37D6, *** SEQUENCING IN PROGRESS ***, 10 unordered pieces.    50   0.012  1
AF304007|AF304007.1 Gossypium hirsutum OSMIV and OSMIII pseudogenes, complete sequence; and osmotin-like protein (OSMII) gene, promoter region and complete cds.    50   0.012  1
BX950222|BX950222.7 Zebrafish DNA sequence *** SEQUENCING CANCELLED *** from clone  DKEY-47P3.    38   0.012  4
AL954847|AL954847.17 Zebrafish DNA sequence from clone DKEY-68G8 in linkage group 13.    38   0.012  4
AL844506|AL844506.1 Plasmodium falciparum chromosome  7.           38   0.019  5
dna update 2006. 4.28
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AP009180_109(AP009180|pid:none) Candidatus Carsonella ruddii PV ...    35   0.76
protein update 2008.11.22
PSORT -
5' end seq. ID SHI721F
5' end seq. 
>SHI721F.Seq
AATAATTATATGTATATATTTGTTTTTAAATAATGAAAAATTATTTTTTTTATAATTTTT
TTTTAATATAAAAAGGACCTTATATTATTTCTAAAAATTATTTTTTAAATAAATTAAAAA
AAAAANNNNNNNNNN
Length of 5' end seq. 135
3' end seq. ID -
3' end seq. -
Length of 3' end seq. -
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -