>SHI556 (SHI556Q) /CSM/SH/SHI5-C/SHI556Q.Seq.d/
ATTAATTTTTGTATGATTATTATAATTCAAATTAAAAATATATTATATAAATATATATAA
ATATATATTAAATAAAAATAATAATAAAATAAATTTAATATAATAAAAAATTTTTTTGAG
AAAAAAAAAAAANTAAAAAAAAAAAAAAAAAAAAAAAANCCCNAAAAAACCCNAAAAAAA
AANCCCNNNAAAAAAAXXXXXXXXXX

infcmiiiiqiknilykyi*iyik*k***NKFNIIKNFFEKKKKXKKKKKKKXPXKTXKK
XPXKK---

Frame A:
infcmiiiiqiknilykyi*iyik*k***NKFNIIKNFFEKKKKXKKKKKKKXPXKTXKK
XPXKK---


Frame B:
lifv*ll*fklkiyyiniykyilnknnnkinli**kiflrkkkx*kkkkkkkxpkkpxkk
xpxk---


Frame C:
*flydyynsn*kyii*iyiniy*ikiiik*i*ynkkff*ekkkxkkkkkkkkxxknpkkk
xxxk---

 ***** No hits found ******

Lambda     K      H
    1.37    0.711     1.31

Gapped
Lambda     K      H
    1.37    0.711     1.31

Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 821
Number of Sequences: 97611
Number of extensions: 821
Number of successful extensions: 0
Number of sequences better than 10.0: 0
Number of HSP's better than 10.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 0
length of query: 206
length of database: 80,480,566
effective HSP length: 17
effective length of query: 189
effective length of database: 78,821,179
effective search space: 14897202831
effective search space used: 14897202831
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 16 (32.2 bits)

 ***** No hits found ******

Lambda     K      H
    1.37    0.711     1.31

Matrix: blastn matrix:1 -3
Number of Hits to DB: 187,547
Number of Sequences: 56993582
Number of extensions: 187547
Number of successful extensions: 0
Number of sequences better than 10.0: 0
length of query: 206
length of database: 61,528,524,606
effective HSP length: 22
effective length of query: 184
effective length of database: 60,274,665,802
effective search space: 11090538507568
effective search space used: 11090538507568
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)

ANTI-DNA BLAST search was processed by blast@nig.ac.jp, National Institute of Genetics, Japan.

 ***** No hits found ******

Lambda     K      H
   0.318    0.134    0.401

Gapped
Lambda     K      H
   0.267   0.0410    0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3039690
Number of Hits to DB: 20,435,352

 psg: 0.12  gvh: -0.11  alm: 0.83  top: 0.53  tms: 0.00  mit: 0.29  mip: 0.00
 nuc: 0.69  erl: 0.00  erm: 0.20  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 68.0 %: nuclear
	 20.0 %: cytoplasmic
	  4.0 %: cytoskeletal
	  4.0 %: mitochondrial
	  4.0 %: plasma membrane

>> prediction for SHI556 is nuc

>SHI556F.Seq
ATTAATTTTTGTATGATTATTATAATTCAAATTAAAAATATATTATATAAATATATATAA
ATATATATTAAATAAAAATAATAATAAAATAAATTTAATATAATAAAAAATTTTTTTGAG
AAAAAAAAAAAANTAAAAAAAAAAAAAAAAAAAAAAAANCCCNAAAAAACCCNAAAAAAA
AANCCCNNNAAAAAAANNNNNNNNNN