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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
AFJ569
Library AF
(Link to library)
Clone ID AFJ569
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16408-1
Original site URL
Representative seq. ID AFJ569P
(Link to Original site)
Representative DNA sequence 
>AFJ569 (AFJ569Q) /CSM/AF/AFJ5-C/AFJ569Q.Seq.d/
AATTCCTCACAAGATAATGAAGAAATTAAAAAGAGATTACAAAGTGCTCATCAACAATTA
CAAGAACAATCACCTGCAATCTATCAATCAATGAAATCTGAAGATCTAAAAAATTTAGAT
GATGAAGTAATTCGTAATACTCTTAAGGAAATGCAAATTCAACGTGAAAATCAAGATATT
GGTCAACAAAATCAAGAAGATAAAGAACAATTAATTGATTTACAAAATAGAGAACCTGGT
TTATACAAAAATCAACAAGATCTTAAACAAGAGAAAAGAGCCAATCAACAAGAATTAATC
AATTATGAATTAAATTTACAAGAAGATCAAGAACAATATGAACTTTTATTAGATCAACTC
TATGATGAACAACAACAACAACCACAAAAAGTTTCAAATAAACAACAACTTCAAGAACAA
CAAATTAATTCACCCGAGGATATTCAATATCAATTAAATCATTTAAATCAACCATTCCAA
GATGACTATCATAATGATCAAACTGAAGAATTAAAAGATGATGATTATAATTTTAATGAT
CAACAAATTAACAATGGTCAATTTGAAAATAATGTTGAAGAATTTCCTGATTTAAATGAT
GCTAATGATAATTTTGAACAAGTTAACAACAXXXXXXXXXXAGGNCAACGTACNAGTTCN
AGNAACAAATGTTGNACNNCAAATCGTTGNNCNACTTANAGTTATCAAAGAATTTCAAAG
ACAAGATCAACAAAAGAAACAAAGNNTTCAACAAGAGACCGATGCTGTATANNTGAGTGA
TGTTGNAAAAGCTCAACTTGAATTGGATGCTGAATTGGCTAAAAATAATAAACAAGAGAA
TCAAGATGAGAATTTAGTTCAAGAGAAACAACAATCTCCTGACCAAATTAAAAATCAATT
AAAAAATATTCAACATGAACAACAAATCCAAGAACAACAAGATAAATTAAATCAAGAAAA
AAATCAACAATTATTAGAACAAGAACATTTNNAAAAATAA
sequence update 2001. 6. 1
Translated Amino Acid sequence 
NSSQDNEEIKKRLQSAHQQLQEQSPAIYQSMKSEDLKNLDDEVIRNTLKEMQIQRENQDI
GQQNQEDKEQLIDLQNREPGLYKNQQDLKQEKRANQQELINYELNLQEDQEQYELLLDQL
YDEQQQQPQKVSNKQQLQEQQINSPEDIQYQLNHLNQPFQDDYHNDQTEELKDDDYNFND
QQINNGQFENNVEEFPDLNDANDNFEQVNN---

---XNVXVXXTNVXXQIVXXLXVIKEFQRQDQQKKQXXQQETDAVXXSDVXKAQLELDAE
LAKNNKQENQDENLVQEKQQSPDQIKNQLKNIQHEQQIQEQQDKLNQEKNQQLLEQEHXX
K*
Translated Amino Acid sequence (All Frames) 
Frame A:
NSSQDNEEIKKRLQSAHQQLQEQSPAIYQSMKSEDLKNLDDEVIRNTLKEMQIQRENQDI
GQQNQEDKEQLIDLQNREPGLYKNQQDLKQEKRANQQELINYELNLQEDQEQYELLLDQL
YDEQQQQPQKVSNKQQLQEQQINSPEDIQYQLNHLNQPFQDDYHNDQTEELKDDDYNFND
QQINNGQFENNVEEFPDLNDANDNFEQVNN---

---rxtyxfxxqmlxxkslxxlxlsknfkdkinkrnkxfnkrpmlyx*vmlxklnlnwml
nwlkiinkrikmri*fkrnnnlltklkin*kifnmnnksknnkin*ikkkinny*nknix
kn

Frame B:
iphkimkklkrdykvlinnyknnhlqsinq*nlki*ki*mmk*fvillrkckfnvkikil
vnkikkiknn*liykienlvytkinkilnkrkepinkn*simn*iykkiknnmnfy*ins
mmnnnnnhkkfqinnnfknnklihprifnin*ii*inhskmtiimiklkn*kmmiiilmi
nkltmvnlkimlknfli*mmlmiilnkltt---

---gqrtssxnkcxtxnrxxtxsyqrisktrstketkxstrdrccixe*cxksst*igc*
ig*k**tresr*efssrettis*pn*ksikkyst*ttnprttr*iksrkkstiirtrtfx
ki

Frame C:
fltr**rn*keitkcsstitrtitcnlsinei*rskkfr**sns*ys*gnanst*ksryw
stksrr*rtin*ftk*rtwfiqkstrs*treksqstrinql*ikftrrsrti*tfirstl
**ttttttksfk*tttsrttn*ftrgysisiksfkstipr*ls**sn*rikr**l*f**s
tn*qwsi*k*c*ris*fk*c***f*ts*q---

---XNVXVXXTNVXXQIVXXLXVIKEFQRQDQQKKQXXQQETDAVXXSDVXKAQLELDAE
LAKNNKQENQDENLVQEKQQSPDQIKNQLKNIQHEQQIQEQQDKLNQEKNQQLLEQEHXX
K*
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AFJ569 (AFJ569Q) /CSM/AF/AFJ5-C/AFJ569Q.Seq.d/                        963   0.0
SFK701 (SFK701Q) /CSM/SF/SFK7-A/SFK701Q.Seq.d/                        708   0.0
SFJ324 (SFJ324Q) /CSM/SF/SFJ3-A/SFJ324Q.Seq.d/                        708   0.0
CHD226 (CHD226Q) /CSM/CH/CHD2-B/CHD226Q.Seq.d/                        708   0.0
CHC215 (CHC215Q) /CSM/CH/CHC2-A/CHC215Q.Seq.d/                        708   0.0
CFH714 (CFH714Q) /CSM/CF/CFH7-A/CFH714Q.Seq.d/                        708   0.0
CFG751 (CFG751Q) /CSM/CF/CFG7-C/CFG751Q.Seq.d/                        708   0.0
CFG652 (CFG652Q) /CSM/CF/CFG6-C/CFG652Q.Seq.d/                        708   0.0
CFF619 (CFF619Q) /CSM/CF/CFF6-A/CFF619Q.Seq.d/                        708   0.0
CFE142 (CFE142Q) /CSM/CF/CFE1-B/CFE142Q.Seq.d/                        708   0.0
own update 2004.12.25
Homology vs DNA 

                                                               Score     E
Sequences producing significant alignments:                    (bits)  Value  N

U25143|U25143.1 Dictyostelium discoideum cAMP-inducible prespore protein gene, complete cds.   708  0.0  4
AC116986|AC116986.2 Dictyostelium discoideum chromosome 2 map 2234041-2567370 strain AX4, complete sequence.    36  1e-05  13
AE002101|AE002101.1 Ureaplasma urealyticum section 2 of 59 of the complete genome.    32  0.002  7
AL096783|AL096783.2 Plasmodium falciparum DNA *** SEQUENCING IN PROGRESS *** from  MAL13P9.    38  0.005  5
AL445565|AL445565.1 Mycoplasma pulmonis (strain UAB CTIP) complete genome; segment 3/3.    32  0.008  14
AE014830|AE014830.1 Plasmodium falciparum 3D7 chromosome 10 section 2 of 7 of the complete sequence.    40  0.017  11
AC117076|AC117076.2 Dictyostelium discoideum chromosome 2 map 5862124-6045772 strain AX4, complete sequence.    34  0.018  10
AC116061|AC116061.4 Rattus norvegicus clone CH230-242M3, *** SEQUENCING IN PROGRESS ***, 5 unordered pieces.    36  0.022  8
AC116984|AC116984.2 Dictyostelium discoideum chromosome 2 map 2567470-3108875 strain AX4, complete sequence.    38  0.022  14
AC116988|AC116988.2 Dictyostelium discoideum chromosome 2 map 6445720-6776760 strain AX4, complete sequence.    36  0.026  17
dna update 2003. 9. 5
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(P54682) RecName: Full=cAMP-inducible prespore protein D7; Flags...   333   5e-90
CR940347_653(CR940347|pid:none) Theileria annulata strain Ankara...    51   7e-05
AF305694_1(AF305694|pid:none) Kaposi's sarcoma-associated herpes...    47   0.001
BC149000_1(BC149000|pid:none) Bos taurus involucrin, mRNA (cDNA ...    45   0.005
(Q54VY3) RecName: Full=Putative uncharacterized protein DDB_G028...    45   0.005
AP006628_380(AP006628|pid:none) Onion yellows phytoplasma OY-M D...    44   0.006
(O76329) RecName: Full=Interaptin; AltName: Full=Alpha-actinin B...    44   0.008
CP001186_4748(CP001186|pid:none) Bacillus cereus G9842, complete...    43   0.014
AP006628_47(AP006628|pid:none) Onion yellows phytoplasma OY-M DN...    43   0.014
U52064_1(U52064|pid:none) Kaposi's sarcoma-associated herpes-lik...    43   0.018
protein update 2009. 4.24
PSORT 

 psg: 0.75  gvh: 0.20  alm: 0.43  top: 0.53  tms: 0.00  mit: 0.20  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.50  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 48.0 %: nuclear
	 36.0 %: cytoplasmic
	  4.0 %: cytoskeletal
	  4.0 %: mitochondrial
	  4.0 %: plasma membrane
	  4.0 %: endoplasmic reticulum

>> prediction for AFJ569 is nuc
5' end seq. ID AFJ569F
5' end seq. 
>AFJ569F.Seq
AATTCCTCACAAGATAATGAAGAAATTAAAAAGAGATTACAAAGTGCTCATCAACAATTA
CAAGAACAATCACCTGCAATCTATCAATCAATGAAATCTGAAGATCTAAAAAATTTAGAT
GATGAAGTAATTCGTAATACTCTTAAGGAAATGCAAATTCAACGTGAAAATCAAGATATT
GGTCAACAAAATCAAGAAGATAAAGAACAATTAATTGATTTACAAAATAGAGAACCTGGT
TTATACAAAAATCAACAAGATCTTAAACAAGAGAAAAGAGCCAATCAACAAGAATTAATC
AATTATGAATTAAATTTACAAGAAGATCAAGAACAATATGAACTTTTATTAGATCAACTC
TATGATGAACAACAACAACAACCACAAAAAGTTTCAAATAAACAACAACTTCAAGAACAA
CAAATTAATTCACCCGAGGATATTCAATATCAATTAAATCATTTAAATCAACCATTCCAA
GATGACTATCATAATGATCAAACTGAAGAATTAAAAGATGATGATTATAATTTTAATGAT
CAACAAATTAACAATGGTCAATTTGAAAATAATGTTGAAGAATTTCCTGATTTAAATGAT
GCTAATGATAATTTTGAACAAGTTAACAACA----------
Length of 5' end seq. 631
3' end seq. ID AFJ569Z
3' end seq. 
>AFJ569Z.Seq
----------AGGNCAACGTACNAGTTCNAGNAACAAATGTTGNACNNCAAATCGTTGNN
CNACTTANAGTTATCAAAGAATTTCAAAGACAAGATCAACAAAAGAAACAAAGNNTTCAA
CAAGAGACCGATGCTGTATANNTGAGTGATGTTGNAAAAGCTCAACTTGAATTGGATGCT
GAATTGGCTAAAAATAATAAACAAGAGAATCAAGATGAGAATTTAGTTCAAGAGAAACAA
CAATCTCCTGACCAAATTAAAAATCAATTAAAAAATATTCAACATGAACAACAAATCCAA
GAACAACAAGATAAATTAAATCAAGAAAAAAATCAACAATTATTAGAACAAGAACATTTN
NAAAAATAA
Length of 3' end seq. 359
Connected seq. ID AFJ569P
Connected seq. 
>AFJ569P.Seq
AATTCCTCACAAGATAATGAAGAAATTAAAAAGAGATTACAAAGTGCTCATCAACAATTA
CAAGAACAATCACCTGCAATCTATCAATCAATGAAATCTGAAGATCTAAAAAATTTAGAT
GATGAAGTAATTCGTAATACTCTTAAGGAAATGCAAATTCAACGTGAAAATCAAGATATT
GGTCAACAAAATCAAGAAGATAAAGAACAATTAATTGATTTACAAAATAGAGAACCTGGT
TTATACAAAAATCAACAAGATCTTAAACAAGAGAAAAGAGCCAATCAACAAGAATTAATC
AATTATGAATTAAATTTACAAGAAGATCAAGAACAATATGAACTTTTATTAGATCAACTC
TATGATGAACAACAACAACAACCACAAAAAGTTTCAAATAAACAACAACTTCAAGAACAA
CAAATTAATTCACCCGAGGATATTCAATATCAATTAAATCATTTAAATCAACCATTCCAA
GATGACTATCATAATGATCAAACTGAAGAATTAAAAGATGATGATTATAATTTTAATGAT
CAACAAATTAACAATGGTCAATTTGAAAATAATGTTGAAGAATTTCCTGATTTAAATGAT
GCTAATGATAATTTTGAACAAGTTAACAACA----------AGGNCAACGTACNAGTTCN
AGNAACAAATGTTGNACNNCAAATCGTTGNNCNACTTANAGTTATCAAAGAATTTCAAAG
ACAAGATCAACAAAAGAAACAAAGNNTTCAACAAGAGACCGATGCTGTATANNTGAGTGA
TGTTGNAAAAGCTCAACTTGAATTGGATGCTGAATTGGCTAAAAATAATAAACAAGAGAA
TCAAGATGAGAATTTAGTTCAAGAGAAACAACAATCTCCTGACCAAATTAAAAATCAATT
AAAAAATATTCAACATGAACAACAAATCCAAGAACAACAAGATAAATTAAATCAAGAAAA
AAATCAACAATTATTAGAACAAGAACATTTNNAAAAATAA
Length of connected seq. 990
Full length Seq ID -
Full length Seq. -
Length of full length seq. -