SHI333
Library SH
(Link to library)
Clone ID SHI333
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U11129-1
Original site URL
Representative seq. ID
(Link to Original site)
Representative DNA sequence
>SHI333 (SHI333Q) /CSM/SH/SHI3-B/SHI333Q.Seq.d/
ATCATTGTTAATAGCAAAAGAAAAATGGCAACAAAAAATACATCTCCTTATGAGATTGAA
TATGCAAAGAGTGATAGATCAACATGTTCAACCTGTCAAAGAGGTATTAATAAAGAAGCA
GTTCGTATTGGTTATAAAACAAAATCAAAACACTTTGATGGAATGGATGTATCATGGCAT
CATTTAAAATGTAAATGTCCACAAGTACCATCATTTACAGATTTAATTCACTGGGAATAC
CTTCGTTGGGAAGACCAATTATCAATTAAAACAACTTATTTTTCATCTGAAAAGTATGAT
CCAAAATCAGCATCAGAGGTACAAAGAGAGAAATATTTAAAGGCATTATGGGAAGTTAAA
GATAGTATTGCCGATAACTTGAAGGGACCAGCAATTAAAAACATCATTCAATATAATAAA
GGTTATGTTGATAAGGTATCACCAGTTCATTTGCTTCATACTCTCTCTGATTGGATGTTA
AAAGGTCGTCCAGGTAGATGTCCAACTTGTAAGAATTTCGATATACTTTTCAATGGTATC
GAATATCAATGTAAAGGTTGGATTTCAGGTTTCACAAAATGTGATTGGAAAGGTGATTCA
ATTGAAAGATGXXXXXXXXXX
sequence update 2002.10.25
Translated Amino Acid sequence
IIVNSKRKMATKNTSPYEIEYAKSDRSTCSTCQRGINKEAVRIGYKTKSKHFDGMDVSWH
HLKCKCPQVPSFTDLIHWEYLRWEDQLSIKTTYFSSEKYDPKSASEVQREKYLKALWEVK
DSIADNLKGPAIKNIIQYNKGYVDKVSPVHLLHTLSDWMLKGRPGRCPTCKNFDILFNGI
EYQCKGWISGFTKCDWKGDSIER---


Translated Amino Acid sequence (All Frames)
Frame A:
IIVNSKRKMATKNTSPYEIEYAKSDRSTCSTCQRGINKEAVRIGYKTKSKHFDGMDVSWH
HLKCKCPQVPSFTDLIHWEYLRWEDQLSIKTTYFSSEKYDPKSASEVQREKYLKALWEVK
DSIADNLKGPAIKNIIQYNKGYVDKVSPVHLLHTLSDWMLKGRPGRCPTCKNFDILFNGI
EYQCKGWISGFTKCDWKGDSIER---


Frame B:
slliakekwqqkihllmrlnmqrvidqhvqpvkevlikkqfvlvikqnqntlmewmyhgi
i*nvnvhkyhhlqi*ftgntfvgktnyqlkqlifhlksmiqnqhqrykerni*rhygklk
ivlpit*rdqqlktsfniikvmliryhqficfilsligc*kvvqvdvqlvrisiyfsmvs
ninvkvgfqvsqnvigkviqlkd---


Frame C:
hc**qkkngnkkyisl*d*icke**inmfnlskry**rsssywl*nkiktl*wngcimas
fkm*mststiiyrfnslgipslgrpiin*nnlffi*kv*skisirgtkreifkgimgs*r
*ycr*legtsn*khhsi**rlc**gitssfasysl*ldvkrssr*msnl*efrytfqwyr
ism*rldfrfhkm*ler*fn*k---


Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

SHI333 (SHI333Q) /CSM/SH/SHI3-B/SHI333Q.Seq.d/ 1211 0.0
VHM584 (VHM584Q) /CSM/VH/VHM5-D/VHM584Q.Seq.d/ 1203 0.0
VHH215 (VHH215Q) /CSM/VH/VHH2-A/VHH215Q.Seq.d/ 1203 0.0
VFM520 (VFM520Q) /CSM/VF/VFM5-A/VFM520Q.Seq.d/ 1203 0.0
SHF645 (SHF645Q) /CSM/SH/SHF6-B/SHF645Q.Seq.d/ 1203 0.0
CHQ835 (CHQ835Q) /CSM/CH/CHQ8-B/CHQ835Q.Seq.d/ 1203 0.0
CHI483 (CHI483Q) /CSM/CH/CHI4-D/CHI483Q.Seq.d/ 1203 0.0
CHE850 (CHE850Q) /CSM/CH/CHE8-C/CHE850Q.Seq.d/ 1203 0.0
AHJ311 (AHJ311Q) /CSM/AH/AHJ3-A/AHJ311Q.Seq.d/ 1203 0.0
AHF461 (AHF461Q) /CSM/AH/AHF4-C/AHF461Q.Seq.d/ 1203 0.0

own update 2002.12. 7
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

AJ534948|AJ534948.1 Dictyostelium discoideum mRNA for NAD(+) ADP-ribosyltransferase-1A (adprt-1A gene). 1199 0.0 1
AC025807|AC025807.2 Homo sapiens clone RP11-657G2, WORKING DRAFT SEQUENCE, 15 unordered pieces. 50 0.062 1
AM113503|AM113503.1 Streptococcus sp. 2410 lytA gene for N-acetylmuramoyl-L-alanine amidase, strain 2410. 50 0.062 1
AM113502|AM113502.1 Streptococcus sp. 3137 lytA gene for N-acetylmuramoyl-L-alanine amidase, strain 3137. 50 0.062 1
AM113501|AM113501.1 Streptococcus sp. 1956 lytA gene for N-acetylmuramoyl-L-alanine amidase, strain 1956. 50 0.062 1
AM113500|AM113500.1 Streptococcus sp. 1504 lytA gene for N-acetylmuramoyl-L-alanine amidase, strain 1504. 50 0.062 1
AM113497|AM113497.1 Streptococcus sp. 578 lytA gene for N-acetylmuramoyl-L-alanine amidase, strain 578. 50 0.062 1
AM113496|AM113496.1 Streptococcus pseudopneumoniae lytA gene for N-acetylmuramoyl-L-alanine amidase, strain CCUG 48465. 50 0.062 1
AM113495|AM113495.1 Streptococcus pseudopneumoniae lytA gene for N-acetylmuramoyl-L-alanine amidase, type strain CCUG 49455. 50 0.062 1
AC107307|AC107307.3 Homo sapiens 3 BAC RP11-657G2 (Roswell Park Cancer Institute Human BAC Library) complete sequence. 50 0.062 1
dna update 2006. 4.23
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

(Q9ZP54) RecName: Full=Poly [ADP-ribose] polymerase 1; ... 75 2e-12
(P26446) RecName: Full=Poly [ADP-ribose] polymerase 1; ... 72 2e-11
(Q9ZSV1) RecName: Full=Poly [ADP-ribose] polymerase 1; ... 68 2e-10
AM427768_1(AM427768|pid:none) Vitis vinifera contig VV78X161143.... 68 2e-10
(P18493) RecName: Full=Poly [ADP-ribose] polymerase 1; ... 68 2e-10
(Q7EYV7) RecName: Full=Poly [ADP-ribose] polymerase 1; ... 68 2e-10
GM894209_1(GM894209|pid:none) Sequence 10 from Patent EP1997899. 67 3e-10
AJ222589_1(AJ222589|pid:none) Zea mays mRNA for poly(ADP-ribose)... 67 3e-10
(P35875) RecName: Full=Poly [ADP-ribose] polymerase; Sh... 66 7e-10
(Q11208) RecName: Full=Poly [ADP-ribose] polymerase; Sh... 62 2e-08
protein update 2009. 4.21
PSORT

psg: 0.69 gvh: 0.23 alm: 0.54 top: 0.53 tms: 0.00 mit: 0.38 mip: 0.03
nuc: 0.00 erl: 0.00 erm: 0.00 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

44.0 %: nuclear
28.0 %: mitochondrial
20.0 %: cytoplasmic
4.0 %: cytoskeletal
4.0 %: peroxisomal

>> prediction for SHI333 is nuc

5' end seq. ID SHI333F
5' end seq.
>SHI333F.Seq
ATCATTGTTAATAGCAAAAGAAAAATGGCAACAAAAAATACATCTCCTTATGAGATTGAA
TATGCAAAGAGTGATAGATCAACATGTTCAACCTGTCAAAGAGGTATTAATAAAGAAGCA
GTTCGTATTGGTTATAAAACAAAATCAAAACACTTTGATGGAATGGATGTATCATGGCAT
CATTTAAAATGTAAATGTCCACAAGTACCATCATTTACAGATTTAATTCACTGGGAATAC
CTTCGTTGGGAAGACCAATTATCAATTAAAACAACTTATTTTTCATCTGAAAAGTATGAT
CCAAAATCAGCATCAGAGGTACAAAGAGAGAAATATTTAAAGGCATTATGGGAAGTTAAA
GATAGTATTGCCGATAACTTGAAGGGACCAGCAATTAAAAACATCATTCAATATAATAAA
GGTTATGTTGATAAGGTATCACCAGTTCATTTGCTTCATACTCTCTCTGATTGGATGTTA
AAAGGTCGTCCAGGTAGATGTCCAACTTGTAAGAATTTCGATATACTTTTCAATGGTATC
GAATATCAATGTAAAGGTTGGATTTCAGGTTTCACAAAATGTGATTGGAAAGGTGATTCA
ATTGAAAGATGNNNNNNNNNN
Length of 5' end seq. 621
3' end seq. ID -
3' end seq. -
Length of 3' end seq. -
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -