SHI289
Library SH
(Link to library)
Clone ID SHI289
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U12341-1
Original site URL
Representative seq. ID
(Link to Original site)
Representative DNA sequence
>SHI289 (SHI289Q) /CSM/SH/SHI2-D/SHI289Q.Seq.d/
AATAGCAATAGCAATAATAATAATAATAATAGTAATGGTAAAATTGGTCAACCAGATTAT
TCAATAATTAATTTCACTTATCAATCAGGTATACCACCACCACAATTGTTAATAACTTTT
ACTTCAAATGATAATAATAATAGTCAACAAACACCATTATTAAAAATTGGAGCAGCAATG
TGTTTTGGTAATATATTTATGATTGGTGATGTTTATGGTCATATTAGAATTTGGGTAATA
CCAGTTAATAGTGAACAATTGTTAAATCCAACTAATCAGACAGCAACAACTAGTGGTAAG
AGAATATTAAGAGAACCAAATTTACAAGGATCAATATCTGATGGTTGGAAGAGTGTTGAA
CAGAGTGGTAAAGGTGGCAAAGCAAGACAACAACGTGTTACAGCCTCACTTTTATTGGAT
GATACGATGATGTTGATACGTGGTTACGAGGATGGCAGTATTAGTACCAGTAAATTACCC
ACCGATTTATTTACGAAATTTTATAACAACTCTCATAATAGTAGGGTAAACTATTTGATG
AGTTCACCACCTGGCACTGGTCTAAGACGATTGTTATTCTCTGCATCCAATGATTGCACA
ATTAAAGTTTGGGATTTAAGTACATTCAAATTGTTACACACTTTCTCTCATCATACAGGT
CCCGTGTAXXXXXXXXXX
sequence update 2002.10.25
Translated Amino Acid sequence
NSNSNNNNNNSNGKIGQPDYSIINFTYQSGIPPPQLLITFTSNDNNNSQQTPLLKIGAAM
CFGNIFMIGDVYGHIRIWVIPVNSEQLLNPTNQTATTSGKRILREPNLQGSISDGWKSVE
QSGKGGKARQQRVTASLLLDDTMMLIRGYEDGSISTSKLPTDLFTKFYNNSHNSRVNYLM
SSPPGTGLRRLLFSASNDCTIKVWDLSTFKLLHTFSHHTGPV---


Translated Amino Acid sequence (All Frames)
Frame A:
NSNSNNNNNNSNGKIGQPDYSIINFTYQSGIPPPQLLITFTSNDNNNSQQTPLLKIGAAM
CFGNIFMIGDVYGHIRIWVIPVNSEQLLNPTNQTATTSGKRILREPNLQGSISDGWKSVE
QSGKGGKARQQRVTASLLLDDTMMLIRGYEDGSISTSKLPTDLFTKFYNNSHNSRVNYLM
SSPPGTGLRRLLFSASNDCTIKVWDLSTFKLLHTFSHHTGPV---


Frame B:
iaiaiiiiiivmvklvnqiiq*lislinqvyhhhnc**lllqmiiiivnkhhy*kleqqc
vlviyl*lvmfmvilefg*yqlivnnc*iqlirqqqlvvrey*enqiykdqylmvgrvln
rvvkvakqdnnvlqphfywmir*c*yvvtrmavlvpvnyppiylrnfittliivg*ti**
vhhlalv*ddcyslhpmiaqlkfgi*vhsncytlsliiqvpc---


Frame C:
*q*q*******w*nwstrlfnn*fhlsiryttttivnnfyfk*****stntiiknwssnv
fw*yiydw*clwsy*nlgnts***tivksn*sdsnn*w*enikrtkftrini*wleec*t
ew*rwqsktttcysltfig*yddvdtwlrgwqy*yq*ithrfiyeil*qls***gklfde
fttwhwsktivilciq*lhn*slgfkyiqivthflssyrsr---


Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

SHI289 (SHI289Q) /CSM/SH/SHI2-D/SHI289Q.Seq.d/ 1263 0.0
SHI254 (SHI254Q) /CSM/SH/SHI2-C/SHI254Q.Seq.d/ 634 0.0
CHF594 (CHF594Q) /CSM/CH/CHF5-D/CHF594Q.Seq.d/ 240 2e-62
SSF701 (SSF701Q) /CSM/SS/SSF7-A/SSF701Q.Seq.d/ 42 0.011
SSG887 (SSG887Q) /CSM/SS/SSG8-D/SSG887Q.Seq.d/ 40 0.043
SSG183 (SSG183Q) /CSM/SS/SSG1-D/SSG183Q.Seq.d/ 40 0.043
SLE582 (SLE582Q) /CSM/SL/SLE5-D/SLE582Q.Seq.d/ 40 0.043
CHQ285 (CHQ285Q) /CSM/CH/CHQ2-D/CHQ285Q.Seq.d/ 40 0.043
AFM867 (AFM867Q) /CSM/AF/AFM8-C/AFM867Q.Seq.d/ 40 0.043
VFI759 (VFI759Q) /CSM/VF/VFI7-C/VFI759Q.Seq.d/ 38 0.17

own update 2009. 4. 4
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

AC117075|AC117075.2 Dictyostelium discoideum chromosome 2 map 5201047-5455781 strainAX4, complete sequence. 1263 0.0 1
AC160068|AC160068.2 Bos taurus clone CH240-87H4, *** SEQUENCING IN PROGRESS ***, 24 unordered pieces. 50 0.067 1
AG145314|AG145314.1 Pan troglodytes DNA, clone: RP43-006J05.TJ. 50 0.067 1
AC064852|AC064852.4 Homo sapiens BAC clone RP11-174L18 from 2, complete sequence. 50 0.067 1
AC168748|AC168748.2 Strongylocentrotus purpuratus clone R3-3004P19, WORKING DRAFT SEQUENCE, 19 unordered pieces. 44 0.12 4
CD074001|CD074001.1 MA3-0001U-M278-A11-U.G MA3-0001 Schistosoma mansoni cDNA clone MA3-0001U-M278-A11.G, mRNA sequence. 48 0.27 1
DV147257|DV147257.1 CV03072A1G09.f1 CV03-normalized library Euphorbia esula cDNA clone CV03072A1G09.f1 5, mRNA sequence. 46 1.1 1
AY077832|AY077832.1 Sheeppox virus strain TU-V02127, complete genome. 46 1.1 1
AY077833|AY077833.1 Sheeppox virus A, complete genome. 46 1.1 1
AY077834|AY077834.1 Sheeppox virus NISKHI, complete genome. 46 1.1 1
dna update 2006. 4.22
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

AP009552_6258(AP009552|pid:none) Microcystis aeruginosa NIES-843... 48 2e-04
CP000828_20(CP000828|pid:none) Acaryochloris marina MBIC11017, c... 48 3e-04
BC161098_1(BC161098|pid:none) Xenopus tropicalis hypothetical pr... 47 4e-04
AE017356_19(AE017356|pid:none) Cryptococcus neoformans var. neof... 47 6e-04
BC047972_1(BC047972|pid:none) Xenopus laevis similar to T-cell a... 47 6e-04
CP000117_2838(CP000117|pid:none) Anabaena variabilis ATCC 29413,... 46 8e-04
CP000591_80(CP000591|pid:none) Ostreococcus lucimarinus CCE9901 ... 46 8e-04
AM746676_3634(AM746676|pid:none) Sorangium cellulosum 'So ce 56'... 46 8e-04
CP000828_2434(CP000828|pid:none) Acaryochloris marina MBIC11017,... 46 8e-04
AC116305_77(AC116305|pid:none) Dictyostelium discoideum chromoso... 45 0.001
protein update 2009. 4.21
PSORT

psg: 0.47 gvh: 0.35 alm: 0.35 top: 0.53 tms: 0.00 mit: 0.23 mip: 0.17
nuc: 0.00 erl: 0.00 erm: 0.00 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

40.0 %: cytoplasmic
36.0 %: nuclear
8.0 %: cytoskeletal
8.0 %: mitochondrial
4.0 %: vacuolar
4.0 %: vesicles of secretory system

>> prediction for SHI289 is cyt

5' end seq. ID SHI289F
5' end seq.
>SHI289F.Seq
AATAGCAATAGCAATAATAATAATAATAATAGTAATGGTAAAATTGGTCAACCAGATTAT
TCAATAATTAATTTCACTTATCAATCAGGTATACCACCACCACAATTGTTAATAACTTTT
ACTTCAAATGATAATAATAATAGTCAACAAACACCATTATTAAAAATTGGAGCAGCAATG
TGTTTTGGTAATATATTTATGATTGGTGATGTTTATGGTCATATTAGAATTTGGGTAATA
CCAGTTAATAGTGAACAATTGTTAAATCCAACTAATCAGACAGCAACAACTAGTGGTAAG
AGAATATTAAGAGAACCAAATTTACAAGGATCAATATCTGATGGTTGGAAGAGTGTTGAA
CAGAGTGGTAAAGGTGGCAAAGCAAGACAACAACGTGTTACAGCCTCACTTTTATTGGAT
GATACGATGATGTTGATACGTGGTTACGAGGATGGCAGTATTAGTACCAGTAAATTACCC
ACCGATTTATTTACGAAATTTTATAACAACTCTCATAATAGTAGGGTAAACTATTTGATG
AGTTCACCACCTGGCACTGGTCTAAGACGATTGTTATTCTCTGCATCCAATGATTGCACA
ATTAAAGTTTGGGATTTAAGTACATTCAAATTGTTACACACTTTCTCTCATCATACAGGT
CCCGTGTANNNNNNNNNN
Length of 5' end seq. 678
3' end seq. ID -
3' end seq. -
Length of 3' end seq. -
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -