SHI142
Library SH
(Link to library)
Clone ID SHI142
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16429-1
Original site URL
Representative seq. ID
(Link to Original site)
Representative DNA sequence
>SHI142 (SHI142Q) /CSM/SH/SHI1-B/SHI142Q.Seq.d/
AATTTTAATTTATATAAATTACCTTATTACTTAAAGATGACAACAAATAATCCATTTGAT
AAAGTAAAGGATGTATTAAAATCACAAGATCAAACTTATAATTTTTATAATCTTTCAAAA
CTTCAAGACCCAAGAATTGAAAAATTACCATACTCCATTAGAATTCTTTTGGAATCAGCA
GTTCGTAATTGTGATAACTTTGAAGTACACGAAAAAGATGTTGAAAATATCTTAAATTGG
GAAAACACTGCAAATAAAGTTGAAATTCCTTTCAAACCAGCAAGAGTATTATTACAAGAT
TTTACTGGTGTACCAGCAGTTGTTGATCTTGCAGCAATGAGAGATGCCATGAAAAGATTA
GGTGGTGATCCAGCAAAAATTAACCCACTTGTTCCAGTTGATTTAGTTATTGATCACTCT
GTTCAAGTTGATGTATCAAGAACTGTTGATGCTTTAGAGCAAAATCAAAAGATTGAATTC
CATAGAAATCATGAAAGATTTTCATTTTTAAAATGGGGTGCTCAAGCATTTGATGGATTA
TTTATTGCTCCACCTGGGAAGTGGTATTGTACATCAAGTAAATTTAGAGTATATTGCAAG
AGAAGTTATGAATGGAACTGGTAACCTCTTATATCCGXXXXXXXXXX
sequence update 2002.10.25
Translated Amino Acid sequence
NFNLYKLPYYLKMTTNNPFDKVKDVLKSQDQTYNFYNLSKLQDPRIEKLPYSIRILLESA
VRNCDNFEVHEKDVENILNWENTANKVEIPFKPARVLLQDFTGVPAVVDLAAMRDAMKRL
GGDPAKINPLVPVDLVIDHSVQVDVSRTVDALEQNQKIEFHRNHERFSFLKWGAQAFDGL
FIAPPGKWYCTSSKFRVYCKRSYEWNW*plis---


Translated Amino Acid sequence (All Frames)
Frame A:
NFNLYKLPYYLKMTTNNPFDKVKDVLKSQDQTYNFYNLSKLQDPRIEKLPYSIRILLESA
VRNCDNFEVHEKDVENILNWENTANKVEIPFKPARVLLQDFTGVPAVVDLAAMRDAMKRL
GGDPAKINPLVPVDLVIDHSVQVDVSRTVDALEQNQKIEFHRNHERFSFLKWGAQAFDGL
FIAPPGKWYCTSSKFRVYCKRSYEWNW*plis---


Frame B:
iliyinylit*r*qqiihlik*rmy*nhkikliifiifqnfktqelknyhtpleffwnqq
fvivitlkytkkmlkis*igktlqiklkflsnqqeyyykillvyqqllilqq*emp*kd*
vviqqklthlfqli*llitlfklmyqellml*skikrlnsieimkdfhf*ngvlkhlmdy
lllhlgsgivhqvnleyiarevmngtgnlly---


Frame C:
f*fi*itlllkddnk*si**skgcikitrsnl*fl*sfktsrpkn*kitilh*nsfgiss
s*l**l*strkrc*kylklgkhck*s*nsfqtsksiitrfywctssc*scsnerchekir
w*sskn*ptcss*fsy*slcss*ciknc*cfrakskd*ip*ks*kififkmgcssi*wii
ycstwevvlyik*i*silqekl*melvtsyi---


Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

VHQ267 (VHQ267Q) /CSM/VH/VHQ2-C/VHQ267Q.Seq.d/ 1263 0.0
VHG522 (VHG522Q) /CSM/VH/VHG5-A/VHG522Q.Seq.d/ 1263 0.0
SHK736 (SHK736Q) /CSM/SH/SHK7-B/SHK736Q.Seq.d/ 1263 0.0
SHI142 (SHI142Q) /CSM/SH/SHI1-B/SHI142Q.Seq.d/ 1263 0.0
AHK763 (AHK763Q) /CSM/AH/AHK7-C/AHK763Q.Seq.d/ 1263 0.0
AHE819 (AHE819Q) /CSM/AH/AHE8-A/AHE819Q.Seq.d/ 1263 0.0
AHD150 (AHD150Q) /CSM/AH/AHD1-C/AHD150Q.Seq.d/ 1263 0.0
SHC237 (SHC237Q) /CSM/SH/SHC2-B/SHC237Q.Seq.d/ 1255 0.0
AHN181 (AHN181Q) /CSM/AH/AHN1-D/AHN181Q.Seq.d/ 1251 0.0
AHD405 (AHD405Q) /CSM/AH/AHD4-A/AHD405Q.Seq.d/ 1251 0.0

own update 2002.12. 7
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

BE579347|BE579347.1 kq26c09.y1 TBN95TM-SSR Strongyloides stercoralis cDNA 5' similar tomRNA sequence. 64 3e-21 3
BI925204|BI925204.1 EST545093 tomato flower, buds 0-3 mm Lycopersicon esculentum cDNA clone cTOA25H12 5' end, mRNA sequence. 58 8e-20 3
BI930520|BI930520.1 EST550409 tomato flower, 8 mm to preanthesis buds Lycopersicon esculentum cDNA clone cTOC16J14 5' end, mRNA sequence. 58 9e-20 3
CO910019|CO910019.1 BJ02055G09 BJ02 Capsicum annuum cDNA 5', mRNA sequence. 58 9e-20 4
AY250116|AY250116.1 Lycopersicon pennellii aconitase mRNA, partial cds. 60 3e-19 3
CK265172|CK265172.1 EST711250 potato abiotic stress cDNA library Solanum tuberosum cDNA clone POABX20 5' end, mRNA sequence. 58 8e-19 4
D29629|D29629.1 Cucurbita cv. Kurokawa Amakuri mRNA for aconitase, complete cds. 54 8e-17 4
AY250115|AY250115.1 Lycopersicon pennellii aconitase mRNA, partial cds. 60 1e-14 3
CP000084|CP000084.1 Candidatus Pelagibacter ubique HTCC1062, complete genome. 54 4e-13 2
DV035794|DV035794.1 BRS1285 storage root cDNA library Ipomoea batatas cDNA, mRNA sequence. 56 4e-13 2
dna update 2006. 4.20
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

(Q54X73) RecName: Full=Probable cytoplasmic aconitate hydratase;... 354 e-107
EU816775_1(EU816775|pid:none) Perkinsus marinus aconitase-1 mRNA... 241 3e-69
A45785_1(A45785|pid:none) Sequence 23 from Patent WO9520046. &X... 237 2e-67
AP008209_256(AP008209|pid:none) Oryza sativa (japonica cultivar-... 231 2e-65
AF194945_1(AF194945|pid:none) Nicotiana tabacum cytosolic aconit... 231 8e-65
EU958101_1(EU958101|pid:none) Zea mays clone 1673512 unknown mRNA. 230 8e-65
AY050485_1(AY050485|pid:none) Prunus avium putative aconitase mR... 230 1e-64
BT045467_1(BT045467|pid:none) Salmo salar clone ssal-rgf-522-128... 233 3e-64
Y15196_1(Y15196|pid:none) Pacifastacus leniusculus mRNA for iron... 232 4e-64
(P49608) RecName: Full=Aconitate hydratase, cytoplasmic; ... 226 9e-64
protein update 2009. 4.21
PSORT

psg: 0.75 gvh: 0.20 alm: 0.39 top: 0.53 tms: 0.00 mit: 0.29 mip: 0.00
nuc: 0.00 erl: 0.00 erm: 0.00 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

44.0 %: nuclear
40.0 %: cytoplasmic
4.0 %: cytoskeletal
4.0 %: mitochondrial
4.0 %: vacuolar
4.0 %: Golgi

>> prediction for SHI142 is nuc

5' end seq. ID SHI142F
5' end seq.
>SHI142F.Seq
AATTTTAATTTATATAAATTACCTTATTACTTAAAGATGACAACAAATAATCCATTTGAT
AAAGTAAAGGATGTATTAAAATCACAAGATCAAACTTATAATTTTTATAATCTTTCAAAA
CTTCAAGACCCAAGAATTGAAAAATTACCATACTCCATTAGAATTCTTTTGGAATCAGCA
GTTCGTAATTGTGATAACTTTGAAGTACACGAAAAAGATGTTGAAAATATCTTAAATTGG
GAAAACACTGCAAATAAAGTTGAAATTCCTTTCAAACCAGCAAGAGTATTATTACAAGAT
TTTACTGGTGTACCAGCAGTTGTTGATCTTGCAGCAATGAGAGATGCCATGAAAAGATTA
GGTGGTGATCCAGCAAAAATTAACCCACTTGTTCCAGTTGATTTAGTTATTGATCACTCT
GTTCAAGTTGATGTATCAAGAACTGTTGATGCTTTAGAGCAAAATCAAAAGATTGAATTC
CATAGAAATCATGAAAGATTTTCATTTTTAAAATGGGGTGCTCAAGCATTTGATGGATTA
TTTATTGCTCCACCTGGGAAGTGGTATTGTACATCAAGTAAATTTAGAGTATATTGCAAG
AGAAGTTATGAATGGAACTGGTAACCTCTTATATCCGNNNNNNNNNN
Length of 5' end seq. 647
3' end seq. ID -
3' end seq. -
Length of 3' end seq. -
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -