SHI108
Library SH
(Link to library)
Clone ID SHI108
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16471-1
Original site URL
Representative seq. ID
(Link to Original site)
Representative DNA sequence
>SHI108 (SHI108Q) /CSM/SH/SHI1-A/SHI108Q.Seq.d/
AAAATAATAAATTTACTATCAAATAACTATTTTTTCTTTTCTTTCTTTTTAAAGTTTAAA
TAATAGAAATAATAAAAATTAATATTAAAAAAAAGGAACGTTAAAAAAAAAAXXXXXXXX
XX
sequence update 2002.10.25
Translated Amino Acid sequence
KIINLLSNNYFFFSFFLKFK**k**klilkkrnvkkk---


Translated Amino Acid sequence (All Frames)
Frame A:
KIINLLSNNYFFFSFFLKFK**k**klilkkrnvkkk---


Frame B:
k**iyyqitifsflsf*slnnrnnkn*y*kkgtlkk---


Frame C:
nnkftik*lfflfflfkv*iieiikinikkker*kk---


Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

SHL875 (SHL875Q) /CSM/SH/SHL8-D/SHL875Q.Seq.d/ 58 3e-08
SHL817 (SHL817Q) /CSM/SH/SHL8-A/SHL817Q.Seq.d/ 58 3e-08
SHL728 (SHL728Q) /CSM/SH/SHL7-B/SHL728Q.Seq.d/ 58 3e-08
SHL515 (SHL515Q) /CSM/SH/SHL5-A/SHL515Q.Seq.d/ 58 3e-08
SHL436 (SHL436Q) /CSM/SH/SHL4-B/SHL436Q.Seq.d/ 58 3e-08
SHL366 (SHL366Q) /CSM/SH/SHL3-C/SHL366Q.Seq.d/ 58 3e-08
SHL270 (SHL270Q) /CSM/SH/SHL2-C/SHL270Q.Seq.d/ 58 3e-08
SHK662 (SHK662Q) /CSM/SH/SHK6-C/SHK662Q.Seq.d/ 58 3e-08
SHK608 (SHK608Q) /CSM/SH/SHK6-A/SHK608Q.Seq.d/ 58 3e-08
SHK184 (SHK184Q) /CSM/SH/SHK1-D/SHK184Q.Seq.d/ 58 3e-08

own update 2004. 5.14
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

U25143|U25143.1 Dictyostelium discoideum cAMP-inducible prespore protein gene, complete cds. 56 5e-08 2
CP000102|CP000102.1 Methanosphaera stadtmanae DSM 3091, complete genome. 48 0.041 1
CV849792|CV849792.1 ID0AEE9BB06RM2 ID0AEE Acyrthosiphon pisum cDNA clone ID0AEE9BB06 5', mRNA sequence. 42 2.5 1
BQ409670|BQ409670.1 GA__Ed0022H01r Gossypium arboreum 7-10 dpa fiber library Gossypium arboreum cDNA clone GA__Ed0022H01r, mRNA sequence. 42 2.5 1
BU656556|BU656556.1 cl12h07.z1 Hembase; Erythroid Precursor Cells (LCB:cl library) Homo sapiens cDNA clone cl12h07 5', mRNA sequence. 42 2.5 1
CR936541|CR936541.3 Zebrafish DNA sequence *** SEQUENCING IN PROGRESS *** from clone. 42 2.5 1
CR847966|CR847966.3 Zebrafish DNA sequence *** SEQUENCING IN PROGRESS *** from clone CH211-71P22. 42 2.5 1
BX173516|BX173516.1 Danio rerio genomic clone DKEY-156A17, genomic survey sequence. 42 2.5 1
CR388371|CR388371.8 Zebrafish DNA sequence from clone DKEY-78N12 in linkage group 6. 42 2.5 1
DA102956|DA102956.1 Homo sapiens cDNA clone BRACE3015783, 5' end, mRNA sequence. 40 9.9 1
dna update 2006. 4.20
Homology vs Protein

***** No hits found ******

Lambda K H
0.318 0.134 0.401

Gapped
Lambda K H
0.267 0.0410 0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3039690
Number of Hits to DB: 34,143,394
protein update 2009. 4.21
PSORT -
5' end seq. ID SHI108F
5' end seq.
>SHI108F.Seq
AAAATAATAAATTTACTATCAAATAACTATTTTTTCTTTTCTTTCTTTTTAAAGTTTAAA
TAATAGAAATAATAAAAATTAATATTAAAAAAAAGGAACGTTAAAAAAAAAANNNNNNNN
NN
Length of 5' end seq. 122
3' end seq. ID -
3' end seq. -
Length of 3' end seq. -
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -