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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
SHH870
Library SH
(Link to library)
Clone ID SHH870
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U11865-1
Original site URL
Representative seq. ID
(Link to Original site)
Representative DNA sequence 
>SHH870 (SHH870Q) /CSM/SH/SHH8-C/SHH870Q.Seq.d/
TTCAATGGCAATATTTTCAGCTGTAGATAATCCAAATTCACCAAATCAAAATAATCAAAA
TCCATATGATACTGAATCGATTATTTCTGGTTATGATAGAGATGATTTATCAGAGTACGA
TTCAGAGAATGAAGAATCTAGACAGCAAACAATTCATAGATCAACATCCACTTTCTCAAT
TCAATCACCGTCTCGTGGTGATAGGGTTTTAAATAGAGCTGAAAGTAATTTTATAACAAG
TGTAAATAGTAGTAATAATAAACAAACTTCTCAACCATTAAGAGATGATATAAAATCAAA
CAGTAGTGATAAACTATTACAACAACCAGATAATATTGATCCATATGAAATTCAACAAAA
TAAACAATCCAATAATAGCAATAGCAATAGCAATAGAAATTTAACACCAAATTCATCATC
ACCAACAAATCAAAGAAAAAATAAACAAGAAGATGATGATGATGAATCTAAATTAGATGA
TGAATCAGATTTGAATGAAAGATTTCAAAAAGTTGTACTTAGATTTAGAGAATTTCCATC
ATTGGATACAAATCTTTATCGCTTACAAGAGATTTGTACAGATTTATTACATATTTCTCA
AGATTTTATACATACTGTCAAAACCTATGGTAGAATTATCATTGAAGAACXXXXXXXXXX
sequence update 2002.10.25
Translated Amino Acid sequence 
SMAIFSAVDNPNSPNQNNQNPYDTESIISGYDRDDLSEYDSENEESRQQTIHRSTSTFSI
QSPSRGDRVLNRAESNFITSVNSSNNKQTSQPLRDDIKSNSSDKLLQQPDNIDPYEIQQN
KQSNNSNSNSNRNLTPNSSSPTNQRKNKQEDDDDESKLDDESDLNERFQKVVLRFREFPS
LDTNLYRLQEICTDLLHISQDFIHTVKTYGRIIIEE---
Translated Amino Acid sequence (All Frames) 
Frame A:
fngnifscr*skftksk*sksi*y*idyfwl**r*firvrfre*ri*tanns*inihfln
sitvsw**gfk*s*k*fynkck*****tnfstikr*ykikq***titttr*y*si*nstk
*tiq**q*q*q*kfntkfiitnkskkk*trr****i*ir**irfe*kisksct*i*risi
igykslsltrdlyrfityfsrfytycqnlw*nyh*r---


Frame B:
SMAIFSAVDNPNSPNQNNQNPYDTESIISGYDRDDLSEYDSENEESRQQTIHRSTSTFSI
QSPSRGDRVLNRAESNFITSVNSSNNKQTSQPLRDDIKSNSSDKLLQQPDNIDPYEIQQN
KQSNNSNSNSNRNLTPNSSSPTNQRKNKQEDDDDESKLDDESDLNERFQKVVLRFREFPS
LDTNLYRLQEICTDLLHISQDFIHTVKTYGRIIIEE---


Frame C:
qwqyfql*iiqihqikiikihmilnrlflvmiemiyqstiqrmknldskqfidqhplsqf
nhrlvvigf*ielkvil*qv*ivviinkllnh*emi*nqtvvinyynnqiilihmkfnki
nnpiiaiaiaiei*hqihhhqqikekinkkmmmmnln*mmnqi*mkdfkklyldlenfhh
wiqifiaykrfvqiyyiflkilyilskpmvelslk---
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SHH870 (SHH870Q) /CSM/SH/SHH8-C/SHH870Q.Seq.d/                       1289   0.0
SHF181 (SHF181Q) /CSM/SH/SHF1-D/SHF181Q.Seq.d/                       1219   0.0
CHN252 (CHN252Q) /CSM/CH/CHN2-C/CHN252Q.Seq.d/                       1122   0.0
CHR591 (CHR591Q) /CSM/CH/CHR5-D/CHR591Q.Seq.d/                        967   0.0
SHD552 (SHD552Q) /CSM/SH/SHD5-C/SHD552Q.Seq.d/                        484   e-136
VSC329 (VSC329Q) /CSM/VS/VSC3-B/VSC329Q.Seq.d/                         54   3e-06
CFI409 (CFI409Q) /CSM/CF/CFI4-A/CFI409Q.Seq.d/                         50   4e-05
AHF808 (AHF808Q) /CSM/AH/AHF8-A/AHF808Q.Seq.d/                         48   2e-04
VSC328 (VSC328Q) /CSM/VS/VSC3-B/VSC328Q.Seq.d/                         46   7e-04
SSD825 (SSD825Q) /CSM/SS/SSD8-B/SSD825Q.Seq.d/                         44   0.003
own update 2004.12.25
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

AY220914|AY220914.1 Dictyostelium discoideum ComB (comB) gene, complete cds.  1289   0.0    1
U66912|U66912.1 Dictyostelium discoideum ORF DG1016 gene, partial cds.   281   1e-71  1
AC116305|AC116305.2 Dictyostelium discoideum chromosome 2 map 1005175-1418323 strain AX4, complete sequence.    48   2e-07  12
AC116957|AC116957.2 Dictyostelium discoideum chromosome 2 map 1685067-2090751 strain AX4, complete sequence.    38   1e-05  11
AC116918|AC116918.3 Dictyostelium discoideum chromosome 2 map 6143698-6163521 strain AX4, complete sequence.    50   1e-05  3
AC117072|AC117072.3 Dictyostelium discoideum chromosome 2 map 3879572-4071762 strain AX4, complete sequence.    42   2e-04  7
CW344417|CW344417.1 104_847_11487943_148_36198_030 Sorghum methylation filtered library (LibID: 104) Sorghum bicolor genomic clone 11487943, genomic survey sequence.    48   6e-04  2
CW344416|CW344416.1 104_847_11487943_116_36197_030 Sorghum methylation filtered library (LibID: 104) Sorghum bicolor genomic clone 11487943, genomic survey sequence.    48   7e-04  2
AC115581|AC115581.3 Dictyostelium discoideum chromosome 2 map complement(3527391-3470188) strain AX4, complete sequence.    52   0.003  5
AC099163|AC099163.5 Rattus norvegicus clone CH230-50K14, *** SEQUENCING IN PROGRESS ***, 3 unordered pieces.    54   0.004  1
dna update 2006. 4.19
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY220914_1(AY220914|pid:none) Dictyostelium discoideum ComB (com...   301   1e-80
U66912_1(U66912|pid:none) Dictyostelium discoideum ORF DG1016 ge...    68   3e-10
AE016819_325(AE016819|pid:none) Ashbya gossypii (= Eremothecium ...    39   0.13
AC116957_36(AC116957|pid:none) Dictyostelium discoideum chromoso...    35   1.4
AY223179_1(AY223179|pid:none) Schistosoma japonicum SJCHGC01517 ...    35   2.4
AE017198_1021(AE017198|pid:none) Lactobacillus johnsonii NCC 533...    34   3.2
(Q8E6N5) RecName: Full=Cell division protein sepF;  &AL766845_17...    33   5.4
AC116963_55(AC116963|pid:none) Dictyostelium discoideum chromoso...    33   5.4
(Q6S000) RecName: Full=Kinesin-related protein 12; AltName: Full...    33   7.0
(Q3K2N8) RecName: Full=Cell division protein sepF;  &CP000114_48...    33   7.0
protein update 2009. 4.21
PSORT 

 psg: 0.75  gvh: 0.30  alm: 0.53  top: 0.53  tms: 0.00  mit: 0.18  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 40.0 %: nuclear
	 36.0 %: cytoplasmic
	  8.0 %: cytoskeletal
	  8.0 %: mitochondrial
	  4.0 %: vacuolar
	  4.0 %: vesicles of secretory system

>> prediction for SHH870 is nuc
5' end seq. ID SHH870F
5' end seq. 
>SHH870F.Seq
TTCAATGGCAATATTTTCAGCTGTAGATAATCCAAATTCACCAAATCAAAATAATCAAAA
TCCATATGATACTGAATCGATTATTTCTGGTTATGATAGAGATGATTTATCAGAGTACGA
TTCAGAGAATGAAGAATCTAGACAGCAAACAATTCATAGATCAACATCCACTTTCTCAAT
TCAATCACCGTCTCGTGGTGATAGGGTTTTAAATAGAGCTGAAAGTAATTTTATAACAAG
TGTAAATAGTAGTAATAATAAACAAACTTCTCAACCATTAAGAGATGATATAAAATCAAA
CAGTAGTGATAAACTATTACAACAACCAGATAATATTGATCCATATGAAATTCAACAAAA
TAAACAATCCAATAATAGCAATAGCAATAGCAATAGAAATTTAACACCAAATTCATCATC
ACCAACAAATCAAAGAAAAAATAAACAAGAAGATGATGATGATGAATCTAAATTAGATGA
TGAATCAGATTTGAATGAAAGATTTCAAAAAGTTGTACTTAGATTTAGAGAATTTCCATC
ATTGGATACAAATCTTTATCGCTTACAAGAGATTTGTACAGATTTATTACATATTTCTCA
AGATTTTATACATACTGTCAAAACCTATGGTAGAATTATCATTGAAGAACNNNNNNNNNN
Length of 5' end seq. 660
3' end seq. ID -
3' end seq. -
Length of 3' end seq. -
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -