>SHH868 (SHH868Q) /CSM/SH/SHH8-C/SHH868Q.Seq.d/
TTTTAGATCGTATTAAACCATTACGTGAAGAGGTTGAACAATTAGAAAACGCTGCAAATG
AATTGAAATTGAAACAAGATGAAATCGTTGCCACCATTACTGCCTTGGAGAAATCTATTG
CCACCTATAAGGAAGAGTATGCAACTTTAATTCGTGAAACTGAACAAATTAAAACCGAAT
CAAGTAAAGTCAAGAATAAGGTCGATCGTTCAATTGCTCTTTTAGATAATCTTAACTCTG
AACGTGGTAGATGGGAACAACAAAGTGAAAACTTTAACACTCAAATGTCAACTGTTGTTG
GTGATGTTGTTTTAGCATCTGCTTTCCTTGCATATATTGGTTTCTTTGATCAAAACTTCC
GTACTGACCTTATGAGAAAATGGATGATTCGTTTAGATTCAGTTGGTATTAAATTCAAGA
GTGATCTATCAGTACCATCTTTCCTTTCCAAACCAGAAGAACGTCTTAACTGGCATGCAA
ATTCTTTACCATCCGATGAATTATGTATTGAAAATGCAATCATGCTTAAACGTTTCAATC
GTTATCCATTGGTTATAGATCCATCTGGTCAAGCCATGGAATTCCTTATGAATCAATATG
CCGACAXXXXXXXXXX

LDRIKPLREEVEQLENAANELKLKQDEIVATITALEKSIATYKEEYATLIRETEQIKTES
SKVKNKVDRSIALLDNLNSERGRWEQQSENFNTQMSTVVGDVVLASAFLAYIGFFDQNFR
TDLMRKWMIRLDSVGIKFKSDLSVPSFLSKPEERLNWHANSLPSDELCIENAIMLKRFNR
YPLVIDPSGQAMEFLMNQYAD---

Frame A:
f*ivlnhyvkrlnn*ktlqmn*n*nkmkslppllpwrnllppirksmql*fvklnklkpn
qvksrirsivqllf*iiltlnvvdgnnkvktltlkcqlllvmlf*hllslhilvslikts
vltl*eng*fv*iqlvlnsrviyqyhlsfpnqknvltgmqilyhpmnyvlkmqsclnvsi
vihwl*ihlvkpwnsl*inmp---


Frame B:
frsy*tit*rg*tirkrck*ieietr*nrchhyclgeiychl*grvcnfns*n*tn*nri
k*sqe*grsfncsfr*s*l*tw*mgttk*kl*hsnvnccw*ccfsicfpciywfl*sklp
y*pyekmddsfrfswy*iqe*sistifpfqtrrts*lackfftir*imy*kcnha*tfqs
lsigyrsiwsshgipyesicr---


Frame C:
LDRIKPLREEVEQLENAANELKLKQDEIVATITALEKSIATYKEEYATLIRETEQIKTES
SKVKNKVDRSIALLDNLNSERGRWEQQSENFNTQMSTVVGDVVLASAFLAYIGFFDQNFR
TDLMRKWMIRLDSVGIKFKSDLSVPSFLSKPEERLNWHANSLPSDELCIENAIMLKRFNR
YPLVIDPSGQAMEFLMNQYAD---

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SHH868 (SHH868Q) /CSM/SH/SHH8-C/SHH868Q.Seq.d/                       1201   0.0
SHH124 (SHH124Q) /CSM/SH/SHH1-A/SHH124Q.Seq.d/                        896   0.0
AHD711 (AHD711Q) /CSM/AH/AHD7-A/AHD711Q.Seq.d/                        262   6e-69
AHL578 (AHL578Q) /CSM/AH/AHL5-D/AHL578Q.Seq.d/                        107   2e-22
VSA412 (VSA412Q) /CSM/VS/VSA4-A/VSA412Q.Seq.d/                         40   0.039
VHE433 (VHE433Q) /CSM/VH/VHE4-B/VHE433Q.Seq.d/                         40   0.039
SHF789 (SHF789Q) /CSM/SH/SHF7-D/SHF789Q.Seq.d/                         40   0.039
SHE382 (SHE382Q) /CSM/SH/SHE3-D/SHE382Q.Seq.d/                         40   0.039
SHB194 (SHB194Q) /CSM/SH/SHB1-D/SHB194Q.Seq.d/                         40   0.039
CHK709 (CHK709Q) /CSM/CH/CHK7-A/CHK709Q.Seq.d/                         40   0.039

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

Z15124|Z15124.1 D.discoideum mRNA for cytoplasmic dynein heavy chain.  1201   0.0    1
AC115592|AC115592.2 Dictyostelium discoideum chromosome 2 map 1-125959 strain AX4, complete sequence.  1201   0.0    1
U80440|U80440.2 Caenorhabditis elegans cosmid T21E12, complete sequence.    46   2e-04  2
L33260|L33260.1 Caenorhabditis elegans dynein heavy chain gene exons 1-15, complete cds.    46   2e-04  2
BJ115244|BJ115244.1 Caenorhabditis elegans cDNA clone:yk1189c07 : 5' end, single read.    46   2e-04  2
AV185848|AV185848.1 Caenorhabditis elegans cDNA clone:yk487e10 : 5' end, single read.    46   2e-04  2
AC090003|AC090003.1 Caenorhabditis briggsae cosmid G45N09, complete sequence.    48   0.11   2
DR779687|DR779687.1 BAAC-PNP1260K12.g1 C.remanei EST SB146 Caenorhabditis remanei cDNA 5, mRNA sequence.    48   0.24   1
DR777907|DR777907.1 BAAC-PNP1255I09.g1 C.remanei EST SB146 Caenorhabditis remanei cDNA 5, mRNA sequence.    48   0.24   1
AC163226|AC163226.2 Bos taurus clone CH240-137B4, *** SEQUENCING IN PROGRESS ***, 21 unordered pieces.    48   0.24   1

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

A44357(A44357;S28504) dynein heavy chain, cytosolic - slime mold...   395   e-109
AM270401_37(AM270401|pid:none) Aspergillus niger contig An18c008...   228   7e-59
CU633897_192(CU633897|pid:none) Podospora anserina genomic DNA c...   227   2e-58
A54794(A54794) dynein heavy chain, cytosolic - fruit fly (Drosop...   226   3e-58
DQ323903_1(DQ323903|pid:none) Danio rerio dynein cytoplasmic 1 h...   226   4e-58
(P45443) RecName: Full=Dynein heavy chain, cytoplasmic; AltName:...   222   5e-57
(Q9JHU4) RecName: Full=Cytoplasmic dynein 1 heavy chain 1; AltNa...   222   5e-57
(Q14204) RecName: Full=Cytoplasmic dynein 1 heavy chain 1; AltNa...   222   5e-57
L08505_1(L08505|pid:none) Rattus norvegicus cytoplasmic dynein h...   222   5e-57
AK122249_1(AK122249|pid:none) Mus musculus mRNA for mKIAA0325 pr...   222   5e-57

 psg: 0.58  gvh: 0.51  alm: 0.29  top: 0.80  tms: 0.07  mit: 0.27  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.20  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 1.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 1.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 0.00 

	 36.0 %: cytoplasmic
	 36.0 %: nuclear
	 12.0 %: mitochondrial
	  8.0 %: Golgi
	  8.0 %: vesicles of secretory system

>> prediction for SHH868 is cyt

>SHH868F.Seq
TTTTAGATCGTATTAAACCATTACGTGAAGAGGTTGAACAATTAGAAAACGCTGCAAATG
AATTGAAATTGAAACAAGATGAAATCGTTGCCACCATTACTGCCTTGGAGAAATCTATTG
CCACCTATAAGGAAGAGTATGCAACTTTAATTCGTGAAACTGAACAAATTAAAACCGAAT
CAAGTAAAGTCAAGAATAAGGTCGATCGTTCAATTGCTCTTTTAGATAATCTTAACTCTG
AACGTGGTAGATGGGAACAACAAAGTGAAAACTTTAACACTCAAATGTCAACTGTTGTTG
GTGATGTTGTTTTAGCATCTGCTTTCCTTGCATATATTGGTTTCTTTGATCAAAACTTCC
GTACTGACCTTATGAGAAAATGGATGATTCGTTTAGATTCAGTTGGTATTAAATTCAAGA
GTGATCTATCAGTACCATCTTTCCTTTCCAAACCAGAAGAACGTCTTAACTGGCATGCAA
ATTCTTTACCATCCGATGAATTATGTATTGAAAATGCAATCATGCTTAAACGTTTCAATC
GTTATCCATTGGTTATAGATCCATCTGGTCAAGCCATGGAATTCCTTATGAATCAATATG
CCGACANNNNNNNNNN