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Dicty_cDB
Contig List | Clone List | cDNA Library List
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
SHH840
Library SH
(Link to library)
Clone ID SHH840
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16471-1
Original site URL
Representative seq. ID
(Link to Original site)
Representative DNA sequence 
>SHH840 (SHH840Q) /CSM/SH/SHH8-B/SHH840Q.Seq.d/
AAATAATAAATTTACTATCAAATAACTATTTTTTCTTTTCTTTCTTTTTAAAGTTTAAAT
AATAGAAATAATAAAAATTAATATTAAAAAAAAGGAACGTTAAAAAAAAAAXXXXXXXXX
X
sequence update 2002.10.25
Translated Amino Acid sequence 
IINLLSNNYFFFSFFLKFK**k**klilkkrnvkkk---
Translated Amino Acid sequence (All Frames) 
Frame A:
k**iyyqitifsflsf*slnnrnnkn*y*kkgtlkk---


Frame B:
nnkftik*lfflfflfkv*iieiikinikkker*kk---


Frame C:
IINLLSNNYFFFSFFLKFK**k**klilkkrnvkkk---
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

VHG846 (VHG846Q) /CSM/VH/VHG8-B/VHG846Q.Seq.d/                         56   1e-07
SHL875 (SHL875Q) /CSM/SH/SHL8-D/SHL875Q.Seq.d/                         56   1e-07
SHL866 (SHL866Q) /CSM/SH/SHL8-C/SHL866Q.Seq.d/                         56   1e-07
SHL828 (SHL828Q) /CSM/SH/SHL8-B/SHL828Q.Seq.d/                         56   1e-07
SHL817 (SHL817Q) /CSM/SH/SHL8-A/SHL817Q.Seq.d/                         56   1e-07
SHL781 (SHL781Q) /CSM/SH/SHL7-D/SHL781Q.Seq.d/                         56   1e-07
SHL750 (SHL750Q) /CSM/SH/SHL7-C/SHL750Q.Seq.d/                         56   1e-07
SHL728 (SHL728Q) /CSM/SH/SHL7-B/SHL728Q.Seq.d/                         56   1e-07
SHL709 (SHL709Q) /CSM/SH/SHL7-A/SHL709Q.Seq.d/                         56   1e-07
SHL645 (SHL645Q) /CSM/SH/SHL6-B/SHL645Q.Seq.d/                         56   1e-07
own update 2002.12. 6
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

U25143|U25143.1 Dictyostelium discoideum cAMP-inducible prespore protein gene, complete cds.    56   5e-08  2
CP000102|CP000102.1 Methanosphaera stadtmanae DSM 3091, complete genome.    46   0.16   1
BQ409670|BQ409670.1 GA__Ed0022H01r Gossypium arboreum 7-10 dpa fiber library Gossypium arboreum cDNA clone GA__Ed0022H01r, mRNA sequence.    42   2.5    1
BU656556|BU656556.1 cl12h07.z1 Hembase; Erythroid Precursor Cells (LCB:cl library) Homo sapiens cDNA clone cl12h07 5', mRNA sequence.    42   2.5    1
CR936541|CR936541.3 Zebrafish DNA sequence *** SEQUENCING IN PROGRESS *** from clone.    42   2.5    1
CR847966|CR847966.3 Zebrafish DNA sequence *** SEQUENCING IN PROGRESS *** from clone CH211-71P22.    42   2.5    1
BX173516|BX173516.1 Danio rerio genomic clone DKEY-156A17, genomic survey sequence.    42   2.5    1
CR388371|CR388371.8 Zebrafish DNA sequence from clone DKEY-78N12 in linkage group 6.    42   2.5    1
CV849792|CV849792.1 ID0AEE9BB06RM2 ID0AEE Acyrthosiphon pisum cDNA clone ID0AEE9BB06 5', mRNA sequence.    40   9.9    1
DA102956|DA102956.1 Homo sapiens cDNA clone BRACE3015783, 5' end, mRNA sequence.    40   9.9    1
dna update 2006. 4.19
Homology vs Protein 

 ***** No hits found ******

Lambda     K      H
   0.318    0.134    0.401

Gapped
Lambda     K      H
   0.267   0.0410    0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3039690
Number of Hits to DB: 31,595,732
protein update 2009. 4.21
PSORT -
5' end seq. ID SHH840F
5' end seq. 
>SHH840F.Seq
AAATAATAAATTTACTATCAAATAACTATTTTTTCTTTTCTTTCTTTTTAAAGTTTAAAT
AATAGAAATAATAAAAATTAATATTAAAAAAAAGGAACGTTAAAAAAAAAANNNNNNNNN
N
Length of 5' end seq. 121
3' end seq. ID -
3' end seq. -
Length of 3' end seq. -
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -