>SHH814 (SHH814Q) /CSM/SH/SHH8-A/SHH814Q.Seq.d/
ACACACCACGCTTTCTCTTACATATAACTAATTATTTTTATTTGGGTACAATTTATAAAA
ATTAAATACATAAAAAAAAAAAAAAAAAAAATCANCAAATAAATAAAAANAAANTTTGAA
TAAAAAATAANTTTGTTTTTTAAANCNNCAAAAAAAAAAANNAAAANAATTTTAAAANNA
AAAXXXXXXXXXX

thhafsyi*LIIFIWVQFIKIKYIKKKKKKIXK*ikxxfe*kixlffkxxkkkxkxilkx
---

Frame A:
thhafsyi*LIIFIWVQFIKIKYIKKKKKKIXK*ikxxfe*kixlffkxxkkkxkxilkx
---


Frame B:
httlsltyn*lflfgynl*klnt*kkkkkksxnk*kxxlnkk*xcflxxqkkkxkxf*xx
---


Frame C:
tprfllhitnyfylgtiykn*ihkkkkkknxqinkxkx*iknxfvf*xxkkkxxxnfkxk
---

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

VHL191 (VHL191Q) /CSM/VH/VHL1-D/VHL191Q.Seq.d/                        141   4e-33
SHH814 (SHH814Q) /CSM/SH/SHH8-A/SHH814Q.Seq.d/                        141   4e-33
VSJ855 (VSJ855Q) /CSM/VS/VSJ8-C/VSJ855Q.Seq.d/                         34   0.71
SSM256 (SSM256Q) /CSM/SS/SSM2-C/SSM256Q.Seq.d/                         34   0.71
SLF264 (SLF264Q) /CSM/SL/SLF2-C/SLF264Q.Seq.d/                         34   0.71
SLB353 (SLB353Q) /CSM/SL/SLB3-C/SLB353Q.Seq.d/                         34   0.71
SHK677 (SHK677Q) /CSM/SH/SHK6-D/SHK677Q.Seq.d/                         34   0.71
CHS259 (CHS259Q) /CSM/CH/CHS2-C/CHS259Q.Seq.d/                         34   0.71
CHR462 (CHR462Q) /CSM/CH/CHR4-C/CHR462Q.Seq.d/                         34   0.71
CFF378 (CFF378Q) /CSM/CF/CFF3-D/CFF378Q.Seq.d/                         34   0.71

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

BH528830|BH528830.1 BOGXE64TF BOGX Brassica oleracea genomic clone BOGXE64, genomicsurvey sequence.    38   0.013  2
DX514538|DX514538.1 702_4_14173455_5489_43652_078 Arachis hypogaea methylation filtered library (LibID702) Arachis hypogaea genomic, genomic survey sequence.    40   0.015  2
DV862051|DV862051.1 CRP1783 Creeping bentgrass EST Agrostis stolonifera cDNA clone CRP248T_B04 3', mRNA sequence.    34   0.054  2
CR968414|CR968414.1 mth4-35C21RM1 BAC end, cultivar Jemalong A17 of Medicago truncatula, genomic survey sequence.    44   0.14   2
CG957369|CG957369.1 MBENF47TF mth2 Medicago truncatula genomic clone 7G22, genomic survey sequence.    44   0.19   2
DX411896|DX411896.1 SOYFL44TV LargeInsertSoybeanGenLibBuild4 Glycine max genomic clone H50H06:Build4MTP8G16, genomic survey sequence.    46   0.28   1
BA000021|BA000021.3 Wigglesworthia glossinidia endosymbiont of Glossina brevipalpis DNA, complete genome.    32   0.54   2
CQ787473|CQ787473.1 Sequence 323 from Patent WO2004020662.         34   0.71   2
CQ787457|CQ787457.1 Sequence 307 from Patent WO2004020662.         34   0.71   2
CQ787273|CQ787273.1 Sequence 123 from Patent WO2004020662.         34   0.72   2

 ***** No hits found ******

Lambda     K      H
   0.318    0.134    0.401

Gapped
Lambda     K      H
   0.267   0.0410    0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3039690
Number of Hits to DB: 118,876,805

 psg: 0.36  gvh: 0.18  alm: 0.43  top: 0.53  tms: 0.00  mit: 0.33  mip: 0.00
 nuc: 0.36  erl: 0.00  erm: 0.40  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 76.0 %: nuclear
	 20.0 %: cytoplasmic
	  4.0 %: cytoskeletal

>> prediction for SHH814 is nuc

>SHH814F.Seq
ACACACCACGCTTTCTCTTACATATAACTAATTATTTTTATTTGGGTACAATTTATAAAA
ATTAAATACATAAAAAAAAAAAAAAAAAAAATCANCAAATAAATAAAAANAAANTTTGAA
TAAAAAATAANTTTGTTTTTTAAANCNNCAAAAAAAAAAANNAAAANAATTTTAAAANNA
AAANNNNNNNNNN