>SHH778 (SHH778Q) /CSM/SH/SHH7-D/SHH778Q.Seq.d/
AACAACAACAAACTCAACAACAACAACAAGCACAACAACAAGCTCAAGCTCAAGCACAAC
ATCATAAAATTCAATCGAAAAAACATCAATTAATTGGAGAATTAATGAAATTAAAAGAAG
AGAATCAAGTTATTATATTTCCAGCTAATCAAATTAGTACACTTCCTAGAGTACCAACAT
TTGTATTTGATAAGATTCCTTCAAAATTTTCACATAGTCAACATTTACAACATAAAGAGA
TTAAATCGACAGTTTTAACAGGATTTTTAAGAGAATGTGAAGATAAAAAGAAAACAGTTG
GTTCCACAAAGACGGCACCAAAAGAAAAAGATGATTATTTCCATTCGAATGGAAATAATC
ATAATAGTCATAGTAGTCATAATAGTCATCATCACCATCATCATCATAATCATAACCACC
ATCATGCTAATCATAATGATCACCATTTCAATGATCTCTATGATGATGAAGATGATGAAA
ATAATAATTATCGTGTTTTCTATTATAATTGCTACGAGAAATCAACACCAACCGTTCATT
TAATTAGTAATCTTAGXXXXXXXXXX

QQQTQQQQQAQQQAQAQAQHHKIQSKKHQLIGELMKLKEENQVIIFPANQISTLPRVPTF
VFDKIPSKFSHSQHLQHKEIKSTVLTGFLRECEDKKKTVGSTKTAPKEKDDYFHSNGNNH
NSHSSHNSHHHHHHHNHNHHHANHNDHHFNDLYDDEDDENNNYRVFYYNCYEKSTPTVHL
ISNL---

Frame A:
nnnklnnnnkhnnklklkhniikfnrknin*len**n*kkrikllyfqliklvhfleyqh
lylirflqnfhivniynikrlnrqf*qdf*envkikrkqlvpqrrhqkkkmiisirmeii
iivivviiviitiiiiiittimliimitismismmmkmmkiiiivfsiiiatrnqhqpfi
*lvil---


Frame B:
tttnsttttstttssssstts*nsiektsinwrineikrressyyiss*sn*yts*stni
ci**dsfkift*stftt*rd*idsfnrifkrm*r*kenswfhkdgtkrkr*lfpfewk*s
**s**s**ssspsss*s*ppsc*s**spfq*sl***r**k**lscfll*llreintnrsf
n**s---


Frame C:
QQQTQQQQQAQQQAQAQAQHHKIQSKKHQLIGELMKLKEENQVIIFPANQISTLPRVPTF
VFDKIPSKFSHSQHLQHKEIKSTVLTGFLRECEDKKKTVGSTKTAPKEKDDYFHSNGNNH
NSHSSHNSHHHHHHHNHNHHHANHNDHHFNDLYDDEDDENNNYRVFYYNCYEKSTPTVHL
ISNL---

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

VHH209 (VHH209Q) /CSM/VH/VHH2-A/VHH209Q.Seq.d/                        577   e-164
VHG636 (VHG636Q) /CSM/VH/VHG6-B/VHG636Q.Seq.d/                        577   e-164
SHH778 (SHH778Q) /CSM/SH/SHH7-D/SHH778Q.Seq.d/                        577   e-164
SHC518 (SHC518Q) /CSM/SH/SHC5-A/SHC518Q.Seq.d/                        577   e-164
AHA288 (AHA288Q) /CSM/AH/AHA2-D/AHA288Q.Seq.d/                        577   e-164
AFG880 (AFG880Q) /CSM/AF/AFG8-D/AFG880Q.Seq.d/                        577   e-164
AHC772 (AHC772Q) /CSM/AH/AHC7-C/AHC772Q.Seq.d/                        569   e-161
AHM451 (AHM451Q) /CSM/AH/AHM4-C/AHM451Q.Seq.d/                        557   e-158
VHE506 (VHE506Q) /CSM/VH/VHE5-A/VHE506Q.Seq.d/                        482   e-135
AHA842 (AHA842Q) /CSM/AH/AHA8-B/AHA842Q.Seq.d/                        272   5e-72

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

CR382398|CR382398.1 Plasmodium falciparum chromosome 6, complete sequence; segment 1/5.    48   2e-04  5
AC179207|AC179207.1 Strongylocentrotus purpuratus clone R3-4019N9, WORKING DRAFT SEQUENCE, 13 unordered pieces.    58   2e-04  1
BX571822|BX571822.6 Zebrafish DNA sequence from clone DKEY-5M24 in linkage group 25.    52   0.014  1
AC184344|AC184344.1 Strongylocentrotus purpuratus clone R3-3072M7, WORKING DRAFT SEQUENCE, 21 unordered pieces.    50   0.056  1
AC181712|AC181712.1 Strongylocentrotus purpuratus clone R3-1039L18, WORKING DRAFT SEQUENCE, 22 unordered pieces.    50   0.056  1
AC180704|AC180704.1 Strongylocentrotus purpuratus clone R3-3020N16, WORKING DRAFT SEQUENCE, 18 unordered pieces.    50   0.056  1
AC180525|AC180525.1 Strongylocentrotus purpuratus clone R3-3099D24, WORKING DRAFT SEQUENCE, 34 unordered pieces.    50   0.056  1
AC180130|AC180130.1 Strongylocentrotus purpuratus clone R3-4007B14, WORKING DRAFT SEQUENCE, 26 unordered pieces.    50   0.056  1
AC179972|AC179972.1 Strongylocentrotus purpuratus clone R3-20B21, WORKING DRAFT SEQUENCE, 14 unordered pieces.    50   0.056  1
AC179426|AC179426.1 Strongylocentrotus purpuratus clone R3-62K16, WORKING DRAFT SEQUENCE, 41 unordered pieces.    50   0.056  1

 ***** No hits found ******

Lambda     K      H
   0.318    0.134    0.401

Gapped
Lambda     K      H
   0.267   0.0410    0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3039690
Number of Hits to DB: 475,104,182

 psg: 0.61  gvh: 0.34  alm: 0.49  top: 0.53  tms: 0.00  mit: 0.26  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.50  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 44.0 %: nuclear
	 36.0 %: cytoplasmic
	  8.0 %: mitochondrial
	  4.0 %: plasma membrane
	  4.0 %: extracellular, including cell wall
	  4.0 %: endoplasmic reticulum

>> prediction for SHH778 is nuc

>SHH778F.Seq
AACAACAACAAACTCAACAACAACAACAAGCACAACAACAAGCTCAAGCTCAAGCACAAC
ATCATAAAATTCAATCGAAAAAACATCAATTAATTGGAGAATTAATGAAATTAAAAGAAG
AGAATCAAGTTATTATATTTCCAGCTAATCAAATTAGTACACTTCCTAGAGTACCAACAT
TTGTATTTGATAAGATTCCTTCAAAATTTTCACATAGTCAACATTTACAACATAAAGAGA
TTAAATCGACAGTTTTAACAGGATTTTTAAGAGAATGTGAAGATAAAAAGAAAACAGTTG
GTTCCACAAAGACGGCACCAAAAGAAAAAGATGATTATTTCCATTCGAATGGAAATAATC
ATAATAGTCATAGTAGTCATAATAGTCATCATCACCATCATCATCATAATCATAACCACC
ATCATGCTAATCATAATGATCACCATTTCAATGATCTCTATGATGATGAAGATGATGAAA
ATAATAATTATCGTGTTTTCTATTATAATTGCTACGAGAAATCAACACCAACCGTTCATT
TAATTAGTAATCTTAGNNNNNNNNNN