SHH745
Library SH
(Link to library)
Clone ID SHH745
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U14623-1
Original site URL
Representative seq. ID
(Link to Original site)
Representative DNA sequence
>SHH745 (SHH745Q) /CSM/SH/SHH7-B/SHH745Q.Seq.d/
TAAAAATATATTATATAAATATATATAAATATATATTAAATAAAAATAATAATAAAATAA
ATTTAATATAATAAAAAATTTTTTTTTTGAGAAAAAAAAAANTAAAAAAAAAAAAAAAAA
AAAAAAANCCNAAAAAANCNAAAAAAAAAAANCCNNNAAAAAAAXXXXXXXXXX
sequence update 2002.10.25
Translated Amino Acid sequence
knilykyi*iyik*k***NKFNIIKNFFFEKKKXKKKKKKKKXXKXXKKKXXKK---


Translated Amino Acid sequence (All Frames)
Frame A:
*kyii*iyiniy*ikiiik*i*ynkkfff*ekkx*kkkkkkkxxkxxkkkxxxk---


Frame B:
knilykyi*iyik*k***NKFNIIKNFFFEKKKXKKKKKKKKXXKXXKKKXXKK---


Frame C:
kiyyiniykyilnknnnkinli**kifflrkkkxkkkkkkkxpkkxkkkxpxk---


Homology vs CSM-cDNA -
own update ----------
Homology vs DNA

***** No hits found ******

Lambda K H
-1.00 -1.00 -1.00

[blastall] WARNING: [000.000] 1145100331.dictycdb.dna: SetUpBlastSearch failed.
[blastall] ERROR: [000.000] 1145100331.dictycdb.dna: BLASTSetUpSearch: Unable to calculate Karlin-Altschul params, check query sequence

ANTI-DNA BLAST search was processed by blast@nig.ac.jp, National Institute of Genetics, Japan.









Dictyostelium discoideum cDNA Project Home



dna update 2006. 4.17
Homology vs Protein

***** No hits found ******

Lambda K H
0.318 0.134 0.401

Gapped
Lambda K H
0.267 0.0410 0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3039690
Number of Hits to DB: 18,961,148
protein update 2009. 4.21
PSORT

psg: 0.46 gvh: -0.01 alm: 0.76 top: 0.53 tms: 0.00 mit: 0.28 mip: 0.00
nuc: 0.94 erl: 0.00 erm: 0.40 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

80.0 %: nuclear
12.0 %: cytoplasmic
4.0 %: cytoskeletal
4.0 %: mitochondrial

>> prediction for SHH745 is nuc

5' end seq. ID SHH745F
5' end seq.
>SHH745F.Seq
TAAAAATATATTATATAAATATATATAAATATATATTAAATAAAAATAATAATAAAATAA
ATTTAATATAATAAAAAATTTTTTTTTTGAGAAAAAAAAAANTAAAAAAAAAAAAAAAAA
AAAAAAANCCNAAAAAANCNAAAAAAAAAAANCCNNNAAAAAAANNNNNNNNNN
Length of 5' end seq. 174
3' end seq. ID -
3' end seq. -
Length of 3' end seq. -
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -