>SHH658 (SHH658Q) /CSM/SH/SHH6-C/SHH658Q.Seq.d/
ATTTTTATTATTGTTTAAATTTATAATGCTACAAGTTTTACAAAAATGAAAGTAATATAT
ATTTATTTGTTATTATTATTAGTTTGTAAATTTTTATTTGTTAAATCAAGTTGCTCTTTA
AAAGTTGGAAAAATAGAATGTACAAAAGAATTAGAAACGTTTTTATTATATAATGAAACA
GTTGTCAATGTAAAAATGGATACAAATGGAGTAAAATATTATTTTAATGCACTCGAGTTT
CCTTACAAGAATCTGTTATGCGATTTAAATATTGATATTAAATTCACACCAGAAATCCCA
TCATTCCCAAATATACCTACGACAGGTGGAGACTTCGGGTTCACCTTCAACTTTCCTTGC
GACTATAGGCGAAGAGTCAAACGAATAGAAATAGAAAGAACTATATTATCTCTCAGTTTT
GATACAAGCAAAAATCAGTTCGTTACTTACTTGAATCCAGGGTGTGGTCCTTTCAATATT
AGTAGTAGTGGGATTCAGATTTTGAGTACAACTTATGAAACTGGTGCCATACCCAATGTA
CCAATTCTCGATGATGATAAAGGTATTTTAACTATTCAAGGTAGTAATCTCTACAATACA
TCAATTAAAATTTATXXXXXXXXXX

ifiiv*IYNATSFTKMKVIYIYLLLLLVCKFLFVKSSCSLKVGKIECTKELETFLLYNET
VVNVKMDTNGVKYYFNALEFPYKNLLCDLNIDIKFTPEIPSFPNIPTTGGDFGFTFNFPC
DYRRRVKRIEIERTILSLSFDTSKNQFVTYLNPGCGPFNISSSGIQILSTTYETGAIPNV
PILDDDKGILTIQGSNLYNTSIKI---

Frame A:
ifiiv*IYNATSFTKMKVIYIYLLLLLVCKFLFVKSSCSLKVGKIECTKELETFLLYNET
VVNVKMDTNGVKYYFNALEFPYKNLLCDLNIDIKFTPEIPSFPNIPTTGGDFGFTFNFPC
DYRRRVKRIEIERTILSLSFDTSKNQFVTYLNPGCGPFNISSSGIQILSTTYETGAIPNV
PILDDDKGILTIQGSNLYNTSIKI---


Frame B:
flllfkfimlqvlqk*k*yificyyy*fvnfyllnqval*klek*nvqkn*krfyyimkq
lsm*kwiqme*niilmhssfltricyai*ililnshqkshhsqiylrqvetsgspstfla
tigeesne*k*kelyylsvliqakissllt*iqgvvlsilvvvgfrf*vqlmklvpypmy
qfsmmikvf*lfkvvistihqlkf---


Frame C:
fyyclnl*cykfyknesniylfviiisl*ific*ikllfkswknrmykrirnvfii**ns
cqckngykwskilf*ctrvslqesvmrfky*y*ihtrnpiipkytydrwrlrvhlqlslr
l*aksqtnrnrknyiisqf*ykqksvryllesrvwsfqy***wdsdfeynl*nwchtqct
nsr***ryfnysr**slqyin*nl---

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SHH658 (SHH658Q) /CSM/SH/SHH6-C/SHH658Q.Seq.d/                       1219   0.0
AHQ603 (AHQ603Q) /CSM/AH/AHQ6-A/AHQ603Q.Seq.d/                       1211   0.0
AHO216 (AHO216Q) /CSM/AH/AHO2-A/AHO216Q.Seq.d/                       1211   0.0
AHN768 (AHN768Q) /CSM/AH/AHN7-C/AHN768Q.Seq.d/                       1211   0.0
AHN114 (AHN114Q) /CSM/AH/AHN1-A/AHN114Q.Seq.d/                       1211   0.0
AHL456 (AHL456Q) /CSM/AH/AHL4-C/AHL456Q.Seq.d/                       1211   0.0
AHK125 (AHK125Q) /CSM/AH/AHK1-B/AHK125Q.Seq.d/                       1211   0.0
AHJ485 (AHJ485Q) /CSM/AH/AHJ4-D/AHJ485Q.Seq.d/                       1211   0.0
AHI785 (AHI785Q) /CSM/AH/AHI7-D/AHI785Q.Seq.d/                       1211   0.0
AHC139 (AHC139Q) /CSM/AH/AHC1-B/AHC139Q.Seq.d/                       1211   0.0

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

AF258615|AF258615.1 Dictyostelium discoideum LagC protein (lagC) gene, complete cds.  1211   0.0    1
AX251740|AX251740.1 Sequence 1 from Patent WO0168911.              46   2e-04  3
AX251397|AX251397.1 Sequence 365 from Patent WO0168912.            46   2e-04  3
AX344156|AX344156.1 Sequence 3 from Patent WO0200926.              46   2e-04  3
BD460204|BD460204.1 Diagnosis of Diseases Associated with Cell Cycle.    46   2e-04  3
BD452918|BD452918.1 Diagnosis of Diseases Associated with tumor suppressor genes and oncogenes.    46   2e-04  3
BD452126|BD452126.1 Diagnosis of Diseases Associated with Cell Cycle.    46   2e-04  3
AL035476|AL035476.7 Plasmodium falciparum MAL4P3.                  36   4e-04  12
AL031745|AL031745.8 Plasmodium falciparum DNA from MAL1P2.         36   0.001  10
AE014824|AE014824.1 Plasmodium falciparum 3D7 chromosome 14 section 9 of 13 of the complete sequence.    36   0.002  10

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

FJ374900_1(FJ374900|pid:none) Dictyostelium discoideum strain QS...   291   8e-78
FJ374891_1(FJ374891|pid:none) Dictyostelium discoideum strain QS...   291   1e-77
FJ374901_1(FJ374901|pid:none) Dictyostelium discoideum strain QS...   289   4e-77
FJ374895_1(FJ374895|pid:none) Dictyostelium discoideum strain QS...   289   5e-77
FJ374893_1(FJ374893|pid:none) Dictyostelium discoideum strain QS...   289   5e-77
FJ374915_1(FJ374915|pid:none) Dictyostelium discoideum strain QS...   287   2e-76
FJ374902_1(FJ374902|pid:none) Dictyostelium discoideum strain QS...   286   4e-76
FJ374918_1(FJ374918|pid:none) Dictyostelium discoideum strain QS...   285   5e-76
FJ374903_1(FJ374903|pid:none) Dictyostelium discoideum strain QS...   284   2e-75
FJ374912_1(FJ374912|pid:none) Dictyostelium discoideum strain QS...   284   2e-75

 psg: 0.95  gvh: 0.68  alm: 0.49  top: 0.60  tms: 0.00  mit: 0.31  mip: 0.00
 nuc: 0.03  erl: 0.00  erm: 0.20  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 24.0 %: nuclear
	 20.0 %: cytoplasmic
	 20.0 %: mitochondrial
	 16.0 %: extracellular, including cell wall
	  8.0 %: vacuolar
	  4.0 %: cytoskeletal
	  4.0 %: Golgi
	  4.0 %: endoplasmic reticulum

>> prediction for SHH658 is nuc

>SHH658F.Seq
ATTTTTATTATTGTTTAAATTTATAATGCTACAAGTTTTACAAAAATGAAAGTAATATAT
ATTTATTTGTTATTATTATTAGTTTGTAAATTTTTATTTGTTAAATCAAGTTGCTCTTTA
AAAGTTGGAAAAATAGAATGTACAAAAGAATTAGAAACGTTTTTATTATATAATGAAACA
GTTGTCAATGTAAAAATGGATACAAATGGAGTAAAATATTATTTTAATGCACTCGAGTTT
CCTTACAAGAATCTGTTATGCGATTTAAATATTGATATTAAATTCACACCAGAAATCCCA
TCATTCCCAAATATACCTACGACAGGTGGAGACTTCGGGTTCACCTTCAACTTTCCTTGC
GACTATAGGCGAAGAGTCAAACGAATAGAAATAGAAAGAACTATATTATCTCTCAGTTTT
GATACAAGCAAAAATCAGTTCGTTACTTACTTGAATCCAGGGTGTGGTCCTTTCAATATT
AGTAGTAGTGGGATTCAGATTTTGAGTACAACTTATGAAACTGGTGCCATACCCAATGTA
CCAATTCTCGATGATGATAAAGGTATTTTAACTATTCAAGGTAGTAATCTCTACAATACA
TCAATTAAAATTTATNNNNNNNNNN